View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_31 (Length: 227)
Name: NF1762_low_31
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26225194 - 26225421
Alignment:
| Q |
1 |
agtgctagtattagtaagctaattggattatgagatactgattacgttagagataaaatagaaagaaaaagcaccaatggaagttgccagttcattgatg |
100 |
Q |
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| T |
26225194 |
agtgctagtattagtaagctaattggattatgagatactgattacgttagagataaaatagaaagaaaaagtaccaatggaagttgacagttcattgatg |
26225293 |
T |
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| Q |
101 |
aaaaccttatctcttaggcaagcaaaagatagcaaacaattgcactgtgaataacagaagcaaaatacaccttaactgcaagttgtatcaaacatatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26225294 |
aaaaccttatctcttaggcaagcaaaagatagcaaacaattgcattgtcaacaacagaagcaaaatacaccttaactgcaagttgtatcaaacatatttt |
26225393 |
T |
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| Q |
201 |
ttgtcaaa-attagcttgaagactacaa |
227 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
26225394 |
ttgtcaaatattagcttgaagactacaa |
26225421 |
T |
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