View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_36 (Length: 215)
Name: NF1762_low_36
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 23750382 - 23750189
Alignment:
| Q |
10 |
tcatcaaacaaattatctggagttattccaagctcgtttggtcacctttctactctggtgtggttgcatttgaataataacagtctgcatggggactttc |
109 |
Q |
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| T |
23750382 |
tcatcaaacaaattatcaggtgttattccaagctcgttcggtcatctttcaactttggtatggttacatttgaataataacagtcttcatggggactttc |
23750283 |
T |
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| Q |
110 |
catca---ttgaggaatttaaagcaattgttaatcttagatattggagagaatcaaatgtcagggactataccttcatggataggcgacatttt |
200 |
Q |
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| T |
23750282 |
catcattgttgaggaatttaaagcaactgttaatcttagatattggagataatcaattgtcagggactataccttcgtggataggtgacatttt |
23750189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 23851084 - 23850890
Alignment:
| Q |
9 |
atcatcaaacaaattatctggagttattccaagctcgtttggtcacctttctactctggtgtggttgcatttgaataataacagtctgcatggggacttt |
108 |
Q |
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| T |
23851084 |
atcatctaacaaattatctggagttattccgagctcatttggtcacctttccactttggtatggttgcatttgaataataacagtattcatggggagttt |
23850985 |
T |
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| Q |
109 |
ccatca---ttgaggaatttaaagcaattgttaatcttagatattggagagaatcaaatgtcagggactataccttcatggataggcgacatttt |
200 |
Q |
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| T |
23850984 |
ccatcattcttgtggaatttaaagcatctgttaatattagatattggagagaatcaaatgtcagggactataccttcgtggataggtgacatttt |
23850890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 20573582 - 20573775
Alignment:
| Q |
10 |
tcatcaaacaaattatctggagttattccaagctcgtttggtcacctttctactctggtgtggttgcatttgaataataacagtctgcatggggactttc |
109 |
Q |
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| T |
20573582 |
tcatcgaacaaattatcaggtgttattccaagctcgttcggtcatctttcaactttggcatggctgcatttgaataataacagtcttcatggggagtttc |
20573681 |
T |
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| Q |
110 |
catca---ttgaggaatttaaagcaattgttaatcttagatattggagagaatcaaatgtcagggactataccttcatggataggcgacatttt |
200 |
Q |
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| T |
20573682 |
catcagtcttgaggaatttaaagcaactgttaatcttagatattggagataataaattgtcagggactataccttcatggataggtgacatttt |
20573775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 22617775 - 22617582
Alignment:
| Q |
10 |
tcatcaaacaaattatctggagttattccaagctcgtttggtcacctttctactctggtgtggttgcatttgaataataacagtctgcatggggactttc |
109 |
Q |
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||||| ||||||||||| || ||||||||||||||||| ||||| ||||| ||| || | ||| |||||||||||||||||| ||| |||||||| |||| |
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| T |
22617775 |
tcatcgaacaaattatcaggtgttattccaagctcgttcggtcagctttcaactttgctatggctgcatttgaataataacaatcttcatggggagtttc |
22617676 |
T |
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| Q |
110 |
catcatt---gaggaatttaaagcaattgttaatcttagatattggagagaatcaaatgtcagggactataccttcatggataggcgacatttt |
200 |
Q |
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| T |
22617675 |
catcattcttgagaaatttaaaacaactgttaatcttagatatcggagagaatcaaatatcaggaactataccttcatggataggtgacatttt |
22617582 |
T |
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