View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_low_4 (Length: 415)

Name: NF1762_low_4
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_low_4
NF1762_low_4
[»] chr5 (10 HSPs)
chr5 (5-333)||(1043275-1043603)
chr5 (5-214)||(1049369-1049569)
chr5 (335-401)||(1043661-1043727)
chr5 (5-53)||(1049579-1049627)
chr5 (338-393)||(1049928-1049983)
chr5 (14-51)||(1032876-1032913)
chr5 (14-51)||(1052199-1052236)
chr5 (355-400)||(1071008-1071053)
chr5 (355-399)||(1046209-1046253)
chr5 (17-57)||(1065046-1065086)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 1043275 - 1043603
Alignment:
Q  5 ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043275 ggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt 1043374  T
Q  105 ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa 204  Q
    ||||||||| ||||||||||| |||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043375 ggagtgagctgaaggtctaaccatcaatgtcaacccaaattggttaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa 1043474  T
Q  205 atataacatgatttttaagcatcaatcaaataactaaggtctaccatcattgccagtaaaccgaagatgatttgggtttgaggttgttattattaagaat 304  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1043475 atataacatgatttttaagcatcaatcaaataacttaggtctaccatcattgacagtaaaccgaagatgatttgggtttgaggttgttattattgagaat 1043574  T
Q  305 tactatcaaggtgtaaccactttctaatg 333  Q
    |||||||||||||||||||||||||||||    
T  1043575 tactatcaaggtgtaaccactttctaatg 1043603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 1049369 - 1049569
Alignment:
Q  5 ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt 104  Q
    |||| ||| |||||||| |||||||||| |||||| ||||||||||||||||| |    | |||||| |||||||||||||||||||| ||||||| ||     
T  1049369 ggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgta---tctatttcgtcatatcattatttattatgtaaataaatgt- 1049464  T
Q  105 ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa 204  Q
         || ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1049465 -----gaccggaaggtctaaccatctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa 1049559  T
Q  205 atataacatg 214  Q
    ||||||||||    
T  1049560 atataacatg 1049569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 1043661 - 1043727
Alignment:
Q  335 tttttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctacggacaagt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043661 tttttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctacggacaagt 1043727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 1049579 - 1049627
Alignment:
Q  5 ggtagattattctgtcagatttggcatgttggaagagtttcaaattcag 53  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  1049579 ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcag 1049627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 1049928 - 1049983
Alignment:
Q  338 ttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctac 393  Q
    |||||||| || | || |||||||||||| ||||||||||||||||||||||||||    
T  1049928 ttccttgttaacccaacagtttatcagccgaatggacaagcaccgatatcttctac 1049983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1032876 - 1032913
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttcaaattc 51  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1032876 ttctgtcagatttggcatgttggaagagtttctaattc 1032913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1052199 - 1052236
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttcaaattc 51  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1052199 ttctgtcagatttggcatgttggaagagtttctaattc 1052236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 1071008 - 1071053
Alignment:
Q  355 agtttatcagccaaatggacaagcaccgatatcttctacggacaag 400  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||    
T  1071008 agtttatcagccaaatgggcaagcaccaatatcttctacagacaag 1071053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 1046209 - 1046253
Alignment:
Q  355 agtttatcagccaaatggacaagcaccgatatcttctacggacaa 399  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||    
T  1046209 agtttatcaaccaaatggacaagcaccaatatcttctacagacaa 1046253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1065046 - 1065086
Alignment:
Q  17 tgtcagatttggcatgttggaagagtttcaaattcaggtat 57  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  1065046 tgtcagatttggcatgttggaagagtttctgattcaggtat 1065086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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