View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_6 (Length: 388)
Name: NF1762_low_6
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 63 - 388
Target Start/End: Original strand, 10047730 - 10048061
Alignment:
| Q |
63 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatga------agtcacgtgacaagaattcggtgtatggtc |
156 |
Q |
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| T |
10047730 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatgattggtgagtcacgtgacaaggattcggtgtatggtc |
10047829 |
T |
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| Q |
157 |
ctacaccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatctaagtagaattcagtgccataaatatttatccc |
256 |
Q |
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| T |
10047830 |
ctataccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatgtaagtagaattcagtgccataaatatttatccc |
10047929 |
T |
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| Q |
257 |
agttcgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
356 |
Q |
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| T |
10047930 |
agtgtgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
10048029 |
T |
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| Q |
357 |
catcacatccatgttttaggtcctatgctact |
388 |
Q |
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| T |
10048030 |
catcacatgcatgttttaggtcccatgttact |
10048061 |
T |
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