View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17630_high_1_N (Length: 399)

Name: NF17630_high_1_N
Description: NF17630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17630_high_1_N
NF17630_high_1_N
[»] chr1 (2 HSPs)
chr1 (28-379)||(11780115-11780467)
chr1 (186-358)||(10424593-10424765)
[»] chr7 (1 HSPs)
chr7 (28-370)||(17158540-17158886)
[»] chr6 (5 HSPs)
chr6 (35-376)||(14977470-14977814)
chr6 (72-243)||(11776308-11776482)
chr6 (187-243)||(9352421-9352477)
chr6 (195-243)||(24353638-24353686)
chr6 (277-331)||(3056134-3056188)
[»] chr2 (1 HSPs)
chr2 (55-376)||(12101751-12102070)
[»] chr5 (4 HSPs)
chr5 (72-347)||(5781913-5782191)
chr5 (72-342)||(19069436-19069709)
chr5 (249-358)||(17763963-17764072)
chr5 (186-243)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (186-332)||(16311632-16311778)
chr3 (186-332)||(18488416-18488562)
chr3 (186-332)||(18492626-18492772)
chr3 (175-338)||(19829018-19829181)
chr3 (186-320)||(16314023-16314157)
chr3 (186-320)||(18495017-18495151)
[»] chr8 (1 HSPs)
chr8 (186-342)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 28 - 379
Target Start/End: Complemental strand, 11780467 - 11780115
Alignment:
Q  28 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  11780467 cagttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctag 11780368  T
Q  128 tgaggagctgctactagctacgccagtgtttgaaattgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  11780367 tgaggagctgctactagctacgccagtgtttgaaattgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcg 11780268  T
Q  227 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  11780267 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccg 11780168  T
Q  327 aagggtgcccatgagcatgtaccacactcatcaattgttgagcaagatgatgt 379  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11780167 aagggtgcccatgagcatgtaccacattcatcaattgttgagcacgatgatgt 11780115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 358
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  286 aacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagcatgtaccacactcatc 358  Q
    || |||||| ||||||||||| ||| ||||||||| |||| |||||| || | |||| ||||||||| |||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 370
Target Start/End: Complemental strand, 17158886 - 17158540
Alignment:
Q  28 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 127  Q
    ||||||||||||||||  |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  17158886 cagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctag 17158787  T
Q  128 tgaggagctgctactagctacgccagtgtttgaaattgtttcccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatc 223  Q
    |||  |||||| ||| |||||||||||||||||||||||||||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| |||    
T  17158786 tgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatc 17158687  T
Q  224 gcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggt 323  Q
    |||||||||||||||||||| ||| ||||||||||||||| | || ||||||||||||||||| ||||||||||||| |||  || |  |||||||| ||    
T  17158686 gcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagt 17158587  T
Q  324 ccgaagggtgcccatgagcatgtaccacactcatcaattgttgagca 370  Q
    || ||||| | |||||||||||||| ||| |||||||||||| ||||    
T  17158586 cccaagggggaccatgagcatgtactacattcatcaattgttaagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 376
Target Start/End: Original strand, 14977470 - 14977814
Alignment:
Q  35 tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggag 134  Q
    ||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| ||    
T  14977470 tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag 14977569  T
Q  135 ctgctactagctacgccagtgtttgaaattgtttcccg-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggagg 231  Q
     ||| |  |||||| |||||| ||||  |||| ||||  |||||  | ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14977570 ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggagg 14977669  T
Q  232 agttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaaggg 331  Q
    || || ||| ||     ||||||||||||||| | ||||| ||  |||||||||||||||||||||||  ||| | ||| ||||||||| |||| |||||    
T  14977670 aggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaaggg 14977769  T
Q  332 tgcccatgagcatgtaccacactcatcaattgttgagcaagatga 376  Q
    | ||||||||||||| ||||| ||||| |||||| |||| |||||    
T  14977770 ttcccatgagcatgttccacattcatccattgtttagcatgatga 14977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  172 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  187 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  195 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 3056134 - 3056188
Alignment:
Q  277 atgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaaggg 331  Q
    ||||||||||||| ||||||||| |||| | ||| |||||||||||||| |||||    
T  3056134 atgatgtggaacacaatcattcgagcccgcgggagctggtggagggtcccaaggg 3056188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 376
Target Start/End: Original strand, 12101751 - 12102070
Alignment:
Q  55 ctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagt 154  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | |||    
T  12101751 ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt 12101850  T
Q  155 gtttgaaattgtttccc---ggttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtt 251  Q
    |||||||||| ||||||      |||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | |    
T  12101851 gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggct 12101950  T
Q  252 gacgatgttactccaacgctctcggatgatgtggaac----ataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagcatgta 347  Q
    |||||||||||| | |  |         |||||||||    |||||||||||||||| | ||| ||||||||| |||| ||||||||| |||||||||||    
T  12101951 gacgatgttactacgatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgta 12102041  T
Q  348 ccacactcatcaattgttgagcaagatga 376  Q
    ||||| ||||||||||||||||| |||||    
T  12102042 ccacattcatcaattgttgagcacgatga 12102070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 72 - 347
Target Start/End: Complemental strand, 5782191 - 5781913
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  172 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 268  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  269 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagcatgta 347  Q
     || || |||||||||||||| |||||||||  ||| | ||| ||||||||| |||| |||||| ||||||||| ||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgta 5781913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 342
Target Start/End: Complemental strand, 19069709 - 19069436
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  172 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 268  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  269 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagc 342  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| ||||||||| |||| ||||||  ||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagc 19069436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 17763963 - 17764072
Alignment:
Q  249 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagcatgtac 348  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| ||||||||| |||  |||||| |||||||||||||      
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgtct 17764062  T
Q  349 cacactcatc 358  Q
    ||||||||||    
T  17764063 cacactcatc 17764072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 16311632 - 16311778
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  286 aacataatcattcgcgcccacaggatctggtggagggtccgaagggt 332  Q
    || |||||| ||||||||||| ||| ||||||||| |||| ||||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggt 16311778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 18488416 - 18488562
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  286 aacataatcattcgcgcccacaggatctggtggagggtccgaagggt 332  Q
    || |||||| ||||||||||| ||| ||||||||| |||| ||||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggt 18488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 18492626 - 18492772
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  286 aacataatcattcgcgcccacaggatctggtggagggtccgaagggt 332  Q
    || |||||| ||||||||||| ||| ||||||||| |||| ||||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggt 18492772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  175 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 274  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  275 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccat 338  Q
     |||||||||||||| |||||||||  ||| | ||| ||||||||| |||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 320
Target Start/End: Original strand, 16314023 - 16314157
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  286 aacataatcattcgcgcccacaggatctggtggag 320  Q
    || |||||| ||||||||||| ||| |||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggag 16314157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 320
Target Start/End: Original strand, 18495017 - 18495151
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  286 aacataatcattcgcgcccacaggatctggtggag 320  Q
    || |||||| ||||||||||| ||| |||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggag 18495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  186 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  286 aacataatcattcgcgcccacaggatctggtggagggtccgaagggtgcccatgagc 342  Q
    |||| ||||||||| |||| | |||  |||||||| |||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University