View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17630_high_2 (Length: 355)
Name: NF17630_high_2
Description: NF17630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17630_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 47679250 - 47678904
Alignment:
| Q |
1 |
ctctggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47679250 |
ctctggccacatacaatttctaaaattattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
47679151 |
T |
|
| Q |
101 |
cactgtatcacaaaataattatgctcaatcattagatatgtacgacaatcgatcttcgatgaccgatcattttcattttccacgttttttgttataaaat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
47679150 |
cactgtatcacaaaacaattatgctcaatcattagatatgaacgacaatcgatcttcgatgaccaatcattttgattttccacgttttttgttataaaat |
47679051 |
T |
|
| Q |
201 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47679050 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
47678951 |
T |
|
| Q |
301 |
tcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctc |
347 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47678950 |
tcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctc |
47678904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 47690573 - 47690457
Alignment:
| Q |
5 |
ggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatccact |
104 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||||||||||| | || |||| ||||||| |||||||||| |||||||||||||| || |
|
|
| T |
47690573 |
ggccacaaacaatttctaaaataattacaccaaaactgaacacatctgacttgatcgaaaattctccatgtttaatgtactctggagccatgtatccgct |
47690474 |
T |
|
| Q |
105 |
gtatcacaaaataatta |
121 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
47690473 |
gtatgtcaaaacaatta |
47690457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 47690306 - 47690192
Alignment:
| Q |
229 |
tagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaagtctg |
328 |
Q |
| |
|
|||||| |||||||| | | ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| |||| |
|
|
| T |
47690306 |
tagttctagcatttcttaagtacttactaagttccaataacggtgcttgtcatgccatgagtttgattggcatcaaacaattttgcaatgccaaaatctg |
47690207 |
T |
|
| Q |
329 |
taatttttgggttca |
343 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
47690206 |
taatttttggattca |
47690192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 6525607 - 6525563
Alignment:
| Q |
30 |
tacaccaaaactaaacacatctgacttaactgagaattgtccatg |
74 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
6525607 |
tacaccaaaactaaatacatctgacttcactgaaaattgtccatg |
6525563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University