View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17630_high_5 (Length: 326)
Name: NF17630_high_5
Description: NF17630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17630_high_5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 52109107 - 52108785
Alignment:
| Q |
1 |
cgcaatgttaatgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattca |
100 |
Q |
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| T |
52109107 |
cgcaatgttaatgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttactattca |
52109011 |
T |
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| Q |
101 |
atctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtggttcaaggccgcaaagagaaactcgtttcgcgggt |
200 |
Q |
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| T |
52109010 |
atctctatggaacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggt |
52108911 |
T |
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| Q |
201 |
catcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgag |
300 |
Q |
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| T |
52108910 |
catcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgag |
52108811 |
T |
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| Q |
301 |
tttattcagaaattagggttaacgat |
326 |
Q |
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| T |
52108810 |
tttattcagaaattagggttaacgat |
52108785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 69 - 326
Target Start/End: Complemental strand, 44520314 - 44520057
Alignment:
| Q |
69 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtggtt |
168 |
Q |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
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| Q |
169 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
268 |
Q |
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| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
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| Q |
269 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgat |
326 |
Q |
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| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgat |
44520057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
11 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
62 |
Q |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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