View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17630_low_1 (Length: 275)
Name: NF17630_low_1
Description: NF17630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17630_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8004704 - 8004441
Alignment:
| Q |
1 |
tcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaa |
100 |
Q |
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| T |
8004704 |
tcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtga |
8004605 |
T |
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| Q |
101 |
ttagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaatta |
200 |
Q |
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| T |
8004604 |
ttagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaatta |
8004505 |
T |
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| Q |
201 |
atgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgat |
264 |
Q |
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| T |
8004504 |
atgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatcccggtaagcaatgat |
8004441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 51518997 - 51518878
Alignment:
| Q |
1 |
tcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaa |
100 |
Q |
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| T |
51518997 |
tcttttgctctctgtcctttgttgattcaagtttgttgatccttgggcggaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtga |
51518898 |
T |
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| Q |
101 |
ttagattagacatatcatac |
120 |
Q |
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| T |
51518897 |
ttagattagacatatcatac |
51518878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 7900522 - 7900664
Alignment:
| Q |
125 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
221 |
Q |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
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| Q |
222 |
gacacttacagataagaaaagattcatcccagtaagcaatgat |
264 |
Q |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgat |
7900664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 51518882 - 51518761
Alignment:
| Q |
143 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
242 |
Q |
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|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
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| Q |
243 |
attcatcccagtaagcaatgat |
264 |
Q |
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| T |
51518782 |
gttcatcccggtcagcaatgat |
51518761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 1300156 - 1300411
Alignment:
| Q |
2 |
cttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaat |
101 |
Q |
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|||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | || |
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| T |
1300156 |
cttttgctctctatccttggttgaatcaagtttgttgatccttgggcggaaattagttggatctcttctaaatgtgatatcaagatgctgcaacgattat |
1300255 |
T |
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| Q |
102 |
tagattagacatatcatacgaacaagtaccaccagag-agaacataattttttaattttaacgtgtgtgatac--cctgaatttttaaaaaggaacgaat |
198 |
Q |
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| T |
1300256 |
tacattagacatttattacaagcaagtaccacgagagcaaaacataatttttaaattttaacatgcatgatacttcaattatttttaaaa---------- |
1300345 |
T |
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| Q |
199 |
taatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgat |
264 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |
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| T |
1300346 |
taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgat |
1300411 |
T |
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