View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17631_high_1 (Length: 571)
Name: NF17631_high_1
Description: NF17631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17631_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 7253590 - 7253412
Alignment:
| Q |
11 |
cagagaccagaaataggttgcaagtaattgattggtccttcttatcaaattatgacacaactaccacgtttattacatataggtaggtgaccatatgaca |
110 |
Q |
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| T |
7253590 |
cagaaaccagaaataggttgcaagtaattgattg-tccttcttatcaaattatgacacaactaccacgtttattacatataggtaggtgaccatatgaca |
7253492 |
T |
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| Q |
111 |
gataaatgaataagacaatatatannnnnnnngaaagagaataactatagacttttactacatgactgaaatttaatttaaa |
192 |
Q |
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| T |
7253491 |
gataaatgaataagacaattttt--tttttttgaaagagaataactatagacttttactacatgactgaaatttaatttaaa |
7253412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 7253407 - 7253339
Alignment:
| Q |
488 |
aattgaaaaatagaaacgcac----acgtctgttatagtttcttttaatctggttataaactgcataca |
552 |
Q |
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| T |
7253407 |
aattgaaaaatagaaacgaacgaacacgtctgttctcgtttcttttaatctggttataaactgcataca |
7253339 |
T |
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