View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17631_high_3 (Length: 385)
Name: NF17631_high_3
Description: NF17631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17631_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 30737263 - 30737616
Alignment:
| Q |
15 |
aggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaaga |
114 |
Q |
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| T |
30737263 |
aggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaaga |
30737362 |
T |
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| Q |
115 |
tcaaggttcctctaccccatcattggtttaattcagtaaaaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagc |
214 |
Q |
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| T |
30737363 |
tcaaggttcctctaccccatcattggtttaattcaggaaaaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagc |
30737462 |
T |
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| Q |
215 |
caacttacatctctcgatgtaaacactatgcaatgaattcatcattgaagcaaggacacaaaatctattggaagcctccaatacaaaagaagcatcatag |
314 |
Q |
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| T |
30737463 |
caacttac--------atgtaaacactatggaatgaattcatccttgaagcaaggacacgaaatctattggaagcctccaatacaaaagaagtatcatag |
30737554 |
T |
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| Q |
315 |
atgttttatatacat-catgttaaattatgccttgacccaagcataataagtcatgtctgtg |
375 |
Q |
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| T |
30737555 |
atgttttatatacatccatgttaacttatgccttgactcaagcataataagtcatgtctgtg |
30737616 |
T |
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