View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17631_high_6 (Length: 309)

Name: NF17631_high_6
Description: NF17631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17631_high_6
NF17631_high_6
[»] chr7 (29 HSPs)
chr7 (87-303)||(25198537-25198754)
chr7 (86-161)||(42805481-42805554)
chr7 (87-161)||(42798626-42798698)
chr7 (86-161)||(42495940-42496013)
chr7 (86-161)||(43557429-43557502)
chr7 (102-161)||(7193042-7193101)
chr7 (86-160)||(14732927-14732999)
chr7 (102-161)||(18326991-18327050)
chr7 (111-158)||(35334942-35334989)
chr7 (102-161)||(46354151-46354210)
chr7 (102-161)||(47077972-47078031)
chr7 (102-161)||(48735240-48735299)
chr7 (111-161)||(32758218-32758268)
chr7 (116-161)||(2541153-2541198)
chr7 (86-161)||(21172112-21172185)
chr7 (102-161)||(5180276-5180335)
chr7 (102-161)||(22699089-22699148)
chr7 (86-159)||(7794611-7794682)
chr7 (111-161)||(42476830-42476880)
chr7 (86-157)||(10693176-10693245)
chr7 (102-158)||(40463837-40463893)
chr7 (86-161)||(47716416-47716489)
chr7 (111-158)||(1424038-1424085)
chr7 (86-156)||(27629596-27629664)
chr7 (8-83)||(48072485-48072560)
chr7 (111-157)||(11617716-11617762)
chr7 (111-161)||(29140488-29140538)
chr7 (117-161)||(2663065-2663109)
chr7 (86-153)||(19426994-19427059)
[»] chr5 (27 HSPs)
chr5 (1-84)||(29990054-29990137)
chr5 (1-85)||(38010609-38010693)
chr5 (1-84)||(13478041-13478124)
chr5 (1-83)||(13421007-13421089)
chr5 (1-83)||(13015473-13015555)
chr5 (8-83)||(13086852-13086927)
chr5 (3-77)||(10292965-10293039)
chr5 (86-161)||(24448847-24448920)
chr5 (86-161)||(41014276-41014349)
chr5 (102-161)||(4619225-4619284)
chr5 (39-86)||(42331064-42331111)
chr5 (86-161)||(38879538-38879611)
chr5 (86-161)||(43334159-43334232)
chr5 (112-161)||(1565388-1565437)
chr5 (120-161)||(19438706-19438747)
chr5 (113-161)||(22600411-22600459)
chr5 (86-161)||(35710270-35710343)
chr5 (86-161)||(37024659-37024732)
chr5 (102-161)||(23974738-23974796)
chr5 (86-158)||(8170087-8170157)
chr5 (8-84)||(33858535-33858611)
chr5 (119-161)||(2838735-2838777)
chr5 (111-161)||(22187242-22187292)
chr5 (111-161)||(22861794-22861844)
chr5 (111-161)||(27328709-27328759)
chr5 (50-83)||(4408372-4408405)
chr5 (124-161)||(41956889-41956926)
[»] chr3 (29 HSPs)
chr3 (1-88)||(47186267-47186354)
chr3 (1-83)||(42664765-42664847)
chr3 (1-83)||(34029288-34029370)
chr3 (1-78)||(31187072-31187149)
chr3 (102-161)||(40272931-40272990)
chr3 (86-161)||(13730709-13730782)
chr3 (86-161)||(52926315-52926388)
chr3 (86-161)||(8247794-8247867)
chr3 (86-161)||(10870056-10870129)
chr3 (86-161)||(29366827-29366900)
chr3 (102-161)||(4495783-4495842)
chr3 (111-158)||(25517301-25517348)
chr3 (86-161)||(9607182-9607255)
chr3 (86-161)||(46421142-46421215)
chr3 (102-161)||(7697004-7697063)
chr3 (102-161)||(16735420-16735479)
chr3 (86-161)||(1217069-1217142)
chr3 (86-161)||(6411926-6411999)
chr3 (119-163)||(21874997-21875041)
chr3 (86-161)||(22609746-22609818)
chr3 (111-161)||(12914163-12914213)
chr3 (111-161)||(39203495-39203545)
chr3 (113-146)||(11461771-11461804)
chr3 (86-161)||(13628897-13628971)
chr3 (102-161)||(5173839-5173899)
chr3 (111-161)||(12525389-12525436)
chr3 (112-160)||(22123044-22123092)
chr3 (111-151)||(26869696-26869736)
chr3 (8-84)||(44380352-44380428)
[»] chr1 (31 HSPs)
chr1 (1-81)||(8809639-8809719)
chr1 (1-85)||(35998344-35998428)
chr1 (86-161)||(22930172-22930245)
chr1 (86-161)||(32632661-32632734)
chr1 (8-83)||(35534501-35534576)
chr1 (102-160)||(19414420-19414478)
chr1 (86-161)||(20004197-20004270)
chr1 (86-161)||(27201627-27201700)
chr1 (86-161)||(34725201-34725274)
chr1 (102-161)||(19932871-19932930)
chr1 (102-161)||(46991784-46991843)
chr1 (101-159)||(18742079-18742137)
chr1 (111-161)||(18944623-18944673)
chr1 (86-161)||(46248058-46248131)
chr1 (102-161)||(34714603-34714662)
chr1 (114-161)||(40424722-40424769)
chr1 (102-161)||(47214491-47214550)
chr1 (111-161)||(14617018-14617068)
chr1 (111-161)||(25290143-25290193)
chr1 (111-161)||(45812663-45812713)
chr1 (86-158)||(30395833-30395903)
chr1 (111-154)||(4430154-4430197)
chr1 (102-145)||(6925096-6925139)
chr1 (102-161)||(8197023-8197082)
chr1 (126-161)||(10668200-10668235)
chr1 (87-161)||(27474261-27474333)
chr1 (102-161)||(38478399-38478458)
chr1 (111-161)||(23768448-23768498)
chr1 (111-161)||(41319934-41319984)
chr1 (113-159)||(45402077-45402122)
chr1 (117-161)||(21723644-21723688)
[»] chr4 (34 HSPs)
chr4 (1-83)||(52012870-52012952)
chr4 (1-84)||(9799359-9799442)
chr4 (8-83)||(46720215-46720290)
chr4 (102-161)||(20224941-20225000)
chr4 (102-162)||(5313113-5313173)
chr4 (86-161)||(5648216-5648289)
chr4 (86-161)||(6430730-6430803)
chr4 (86-157)||(16408708-16408777)
chr4 (86-161)||(48598928-48599001)
chr4 (110-161)||(13256524-13256575)
chr4 (111-158)||(21646924-21646971)
chr4 (102-161)||(23501750-23501809)
chr4 (1-52)||(47943251-47943302)
chr4 (111-161)||(14983791-14983841)
chr4 (111-161)||(20405050-20405100)
chr4 (111-160)||(14590795-14590844)
chr4 (86-161)||(5306768-5306841)
chr4 (113-161)||(10660361-10660409)
chr4 (113-161)||(10874506-10874554)
chr4 (105-161)||(55766588-55766644)
chr4 (102-161)||(11054265-11054324)
chr4 (102-161)||(16911519-16911578)
chr4 (102-161)||(17315417-17315476)
chr4 (111-161)||(30639337-30639387)
chr4 (111-161)||(47528656-47528706)
chr4 (88-155)||(487242-487306)
chr4 (113-153)||(8473750-8473790)
chr4 (121-161)||(18969698-18969738)
chr4 (111-161)||(55830849-55830899)
chr4 (86-142)||(35567146-35567200)
chr4 (8-84)||(1796648-1796724)
chr4 (8-84)||(12473802-12473878)
chr4 (8-84)||(12528211-12528287)
chr4 (127-159)||(30352735-30352767)
[»] chr6 (14 HSPs)
chr6 (1-83)||(34245659-34245741)
chr6 (86-161)||(1346921-1346994)
chr6 (111-161)||(1354883-1354933)
chr6 (112-161)||(1941812-1941861)
chr6 (86-154)||(12222022-12222088)
chr6 (41-81)||(17330515-17330555)
chr6 (102-161)||(3815196-3815255)
chr6 (111-158)||(14975208-14975255)
chr6 (111-161)||(8409200-8409250)
chr6 (111-160)||(24734591-24734640)
chr6 (102-161)||(15866156-15866215)
chr6 (119-161)||(33922964-33923006)
chr6 (111-160)||(20400625-20400674)
chr6 (8-76)||(11113650-11113718)
[»] chr2 (33 HSPs)
chr2 (1-82)||(3668008-3668089)
chr2 (86-161)||(8455421-8455494)
chr2 (1-68)||(10163574-10163641)
chr2 (102-161)||(11514393-11514452)
chr2 (102-161)||(25079837-25079896)
chr2 (86-161)||(12024023-12024096)
chr2 (86-161)||(14530275-14530348)
chr2 (86-161)||(23397723-23397796)
chr2 (87-161)||(7214491-7214563)
chr2 (8-82)||(34392080-34392154)
chr2 (86-161)||(22371014-22371087)
chr2 (110-158)||(27573581-27573629)
chr2 (102-161)||(10543655-10543714)
chr2 (102-161)||(17705452-17705511)
chr2 (102-161)||(21779378-21779437)
chr2 (102-161)||(25249856-25249915)
chr2 (119-161)||(39189557-39189599)
chr2 (116-161)||(9671137-9671182)
chr2 (8-84)||(4775733-4775809)
chr2 (113-161)||(14544020-14544068)
chr2 (102-146)||(17667974-17668018)
chr2 (102-161)||(5840985-5841044)
chr2 (102-161)||(19977833-19977892)
chr2 (53-83)||(9207278-9207308)
chr2 (111-161)||(17896216-17896266)
chr2 (9-83)||(23863801-23863875)
chr2 (102-144)||(39914425-39914467)
chr2 (113-154)||(24860116-24860157)
chr2 (102-143)||(40416990-40417031)
chr2 (102-146)||(17623536-17623580)
chr2 (86-161)||(24200730-24200803)
chr2 (119-159)||(27466266-27466306)
chr2 (111-147)||(44604825-44604861)
[»] chr8 (27 HSPs)
chr8 (86-161)||(36720753-36720826)
chr8 (102-161)||(7136648-7136707)
chr8 (102-161)||(35261636-35261695)
chr8 (86-161)||(12670353-12670426)
chr8 (86-161)||(28817731-28817804)
chr8 (86-161)||(30454200-30454273)
chr8 (86-155)||(28407379-28407446)
chr8 (88-161)||(44530106-44530177)
chr8 (86-154)||(6760786-6760852)
chr8 (86-158)||(20869601-20869671)
chr8 (111-160)||(25250480-25250529)
chr8 (86-161)||(29521790-29521863)
chr8 (86-161)||(39461101-39461174)
chr8 (102-161)||(13160659-13160718)
chr8 (102-161)||(24245408-24245467)
chr8 (1-57)||(1514895-1514951)
chr8 (86-161)||(2626476-2626549)
chr8 (109-154)||(5688801-5688848)
chr8 (86-161)||(17823533-17823606)
chr8 (86-161)||(26954089-26954162)
chr8 (86-160)||(20284178-20284250)
chr8 (86-160)||(21070807-21070879)
chr8 (102-161)||(45071222-45071281)
chr8 (9-83)||(24337828-24337902)
chr8 (86-161)||(18164864-18164937)
chr8 (121-161)||(23286431-23286471)
chr8 (117-161)||(40605039-40605083)
[»] scaffold0057 (2 HSPs)
scaffold0057 (102-161)||(24886-24945)
scaffold0057 (102-155)||(46794-46847)
[»] scaffold0168 (1 HSPs)
scaffold0168 (111-161)||(30536-30586)
[»] scaffold0024 (1 HSPs)
scaffold0024 (88-161)||(83832-83903)
[»] scaffold0005 (1 HSPs)
scaffold0005 (111-160)||(226534-226583)
[»] scaffold0187 (2 HSPs)
scaffold0187 (86-161)||(10153-10226)
scaffold0187 (86-161)||(20481-20554)
[»] scaffold0258 (1 HSPs)
scaffold0258 (111-161)||(13151-13201)
[»] scaffold0311 (1 HSPs)
scaffold0311 (102-155)||(10773-10826)
[»] scaffold1176 (1 HSPs)
scaffold1176 (102-156)||(1704-1758)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 87 - 303
Target Start/End: Complemental strand, 25198754 - 25198537
Alignment:
Q  87 ctgtttccaagactttt-gaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacccgataaaaagaaaactaaaatcata 185  Q
    ||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25198754 ctgtttccaagactttttgatcccatgatctttcagtcatatgacaacaactttaccagttacgccaaggttacccgttaaaaagaaaactaaaatcata 25198655  T
Q  186 ttctcataaataagaaaagagcattcaaaatcccgaattgtacaagtaaattaacacacggcactgctttgctttgcagatgcctattatgagttgggta 285  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25198654 ttcccataaataagaaaagagcattcaaaatcccgaattgtacaagtaaattaacacacggcactgctttgctttgcagatgcctattatgagttgggta 25198555  T
Q  286 gataaacattcatatcac 303  Q
    ||||||||||||||||||    
T  25198554 gataaacattcatatcac 25198537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 42805554 - 42805481
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42805554 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttacgccaaggttaccc 42805481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 42798698 - 42798626
Alignment:
Q  87 ctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||||||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  42798698 ctgtttccaagactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 42798626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 42495940 - 42496013
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  42495940 gctgtttccaggactt--gaacccgtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttaccc 42496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 43557502 - 43557429
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||||||||||| |||||| ||||||||||||||||||||| || |||||||||||    
T  43557502 gctgtttccaggactt--gaacccatgacctttcagtcacatgacaacaactttaccagttgcggcaaggttaccc 43557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 7193101 - 7193042
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  7193101 ttgaacccgtgacctttcagtcacatgacaacaactttacaagttacgccaaggttaccc 7193042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 14732927 - 14732999
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||||||||| |||||  || |||||||| || |||||| ||||||||||||||||||||| |||||||||||||    
T  14732927 gctgtttccaggactt--gaacccatgacttttcagtcacatgacaacaactttaccagttgcgccaaggttacc 14732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 18327050 - 18326991
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  18327050 ttgaacccgtgaccttcaagtcacatgacaacaactttaccagttgcgccaaggttaccc 18326991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 35334942 - 35334989
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  35334942 tgaccttccagtcacatgacaacaactttaccagttgcgccaaggtta 35334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 46354210 - 46354151
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  46354210 ttgaacccgtgaccttccaatcacatgacaacaactttaccagttgcgccaaggttaccc 46354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 47077972 - 47078031
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  47077972 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 47078031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 48735240 - 48735299
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  48735240 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 48735299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 32758268 - 32758218
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  32758268 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 32758218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 2541153 - 2541198
Alignment:
Q  116 ttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2541153 ttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 2541198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 21172112 - 21172185
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||| | ||||||||||||||||||||| ||||||||||||||    
T  21172112 gctgtttccaggactt--gaacccgtgacctttcagttacatgacaacaactttaccagttgcgccaaggttaccc 21172185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5180276 - 5180335
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| || |||||||||||    
T  5180276 ttgaacccttgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 5180335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22699089 - 22699148
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||| ||||| |||||| ||||||||||||||||||||| || |||||||||||    
T  22699089 ttgaacccataacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 22699148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 7794611 - 7794682
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttac 159  Q
    |||||||||| |||||  || ||| |||||||||||||| || |||||||||||||||||| ||| ||||||||    
T  7794611 gctgtttccaggactt--gaacccgtgaccttccagtcacataacaacaactttaccagttgcgctaaggttac 7794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 42476880 - 42476830
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||  ||||| |||||||||||||||||||||||||||| |||||||    
T  42476880 tgaccttttagtcacatgacaacaactttaccagttacgccaatgttaccc 42476830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 10693176 - 10693245
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtt 157  Q
    |||||||||| |||||  || ||| ||||||| |||||| |||||||||||||||| |||| ||||||||||    
T  10693176 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaaggtt 10693245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 40463893 - 40463837
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||| ||| ||||||| |||||| ||||||||||||||||| ||| |||||||||||    
T  40463893 ttgaacccgtgaccttacagtcacatgacaacaactttaccggttgcgccaaggtta 40463837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 47716489 - 47716416
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||| |||||||||| ||||||  |||||||||||||    
T  47716489 gctgtttccaggactt--gaacccgtgaccttccagtcacatggcaacaacttttccagttgtgccaaggttaccc 47716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 1424038 - 1424085
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||||||| || |||||||||||||||||| |||||| ||||    
T  1424038 tgaccttccagtcacataacaacaactttaccagttgcgccaaagtta 1424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 27629664 - 27629596
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggt 156  Q
    |||||||||| |||||  || ||| ||||||| | |||| ||||||||||||||||||||| |||||||||    
T  27629664 gctgtttccaggactt--gaacccgtgacctttcggtcaaatgacaacaactttaccagttgcgccaaggt 27629596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 48072485 - 48072560
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  48072485 ttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 11617716 - 11617762
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtt 157  Q
    ||||||| |||||| ||||||||||||||||||||| |||| |||||    
T  11617716 tgacctttcagtcacatgacaacaactttaccagttgcgccgaggtt 11617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 29140488 - 29140538
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||| | ||||||||||||||||||||| ||||||| ||||||    
T  29140488 tgacctttcagttacatgacaacaactttaccagttgcgccaagattaccc 29140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 2663065 - 2663109
Alignment:
Q  117 tccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||| || ||||||||||||| |||| ||||||||||||||    
T  2663065 tccagtcacataacaacaactttactagttgcgccaaggttaccc 2663109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 19426994 - 19427059
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaa 153  Q
    |||||||||| |||||  || ||| ||||||| | |||| ||||||||||||||||||||| ||||||    
T  19426994 gctgtttccaggactt--gaacccgtgacctttcggtcacatgacaacaactttaccagttgcgccaa 19427059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29990054 - 29990137
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29990054 atatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctatccg 29990137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38010693 - 38010609
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccga 85  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010693 atatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccga 38010609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13478124 - 13478041
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  13478124 atatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtacacatgtgctatccg 13478041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13421089 - 13421007
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13421089 atatatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtgctatcc 13421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13015473 - 13015555
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||    
T  13015473 atatatattttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatgatacgcaagtggtatcc 13015555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 13086852 - 13086927
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||| |||||    
T  13086852 ttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatgataagcaagtggtatcc 13086927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 10292965 - 10293039
Alignment:
Q  3 atatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtg 77  Q
    |||| |||||||||| ||||||||| || |||| |||||||||| ||||||||||||||| ||||||||||||||    
T  10292965 atattttttttaaagggtgtgccacgtggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 24448920 - 24448847
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  24448920 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 24448847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 41014349 - 41014276
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  41014349 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 41014276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 4619225 - 4619284
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4619225 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 4619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 42331111 - 42331064
Alignment:
Q  39 taattggctaatgttatataacataatggtacacaagtgctatccgag 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtgctattcgag 42331064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 38879611 - 38879538
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  38879611 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 38879538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 43334232 - 43334159
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  43334232 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 43334159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 1565437 - 1565388
Alignment:
Q  112 gaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  1565437 gacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1565388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 19438747 - 19438706
Alignment:
Q  120 agtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  19438747 agtcatatgacaacaactttaccagttgcgccaaggttaccc 19438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 22600459 - 22600411
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  22600459 accttccagtcacatgataacaactttaccagttacgtcaaggttaccc 22600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 35710343 - 35710270
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||| | ||||||||||||||||||||| ||||||||||||||    
T  35710343 gctgtttccaggactt--gaacccgtgacctttcagttacatgacaacaactttaccagttgcgccaaggttaccc 35710270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 37024659 - 37024732
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  37024659 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 37024732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 23974796 - 23974738
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  23974796 ttgaacccgtgaccttccagtcacatgacaacaactttacc-gttgcgccaaggttaccc 23974738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 8170087 - 8170157
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||| |||||  || ||| ||||||| | |||| ||||||||||||||||||||| |||||||||||    
T  8170087 gctgtttccaggactt--gaacccgtgacctttcggtcacatgacaacaactttaccagttgcgccaaggtta 8170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 33858611 - 33858535
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    |||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||||||||||||||||||    
T  33858611 ttttttaaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatccg 33858535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 2838777 - 2838735
Alignment:
Q  119 cagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||    
T  2838777 cagtcacatgacaacaactttaccggttgcgccaaggttaccc 2838735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 22187292 - 22187242
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| |||||||||||||||| |||| |||||| |||||||    
T  22187292 tgacctttcagtcaaatgacaacaactttactagttgcgccaaagttaccc 22187242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 22861794 - 22861844
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||| |||||  |||||||||||||    
T  22861794 tgacctttcagtcacatgacaacaactttatcagttgtgccaaggttaccc 22861844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 27328759 - 27328709
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| |||||||||||||||||| || || |||||||||||    
T  27328759 tgacctttcagtcacatgacaacaactttaccaattgcgtcaaggttaccc 27328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 4408405 - 4408372
Alignment:
Q  50 tgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||||||||||| |||||||||||||||    
T  4408405 tgttatataacataatggcacacaagtgctatcc 4408372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 41956926 - 41956889
Alignment:
Q  124 atatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  41956926 atatgacaacaactttaccagttgcgccaatgttaccc 41956889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47186267 - 47186354
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccgagct 88  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186267 atatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatccgagct 47186354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 42664765 - 42664847
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  42664765 atatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 42664847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34029370 - 34029288
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34029370 atatatgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 34029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31187149 - 31187072
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgc 78  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31187149 atatatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgc 31187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 40272931 - 40272990
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  40272931 ttgaacccatgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 40272990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 13730709 - 13730782
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13730709 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 13730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 52926315 - 52926388
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  52926315 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 52926388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 8247794 - 8247867
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  8247794 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 8247867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 10870056 - 10870129
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  10870056 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10870129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 29366827 - 29366900
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  29366827 gctgtttccaggactt--gaacccgtgaccttttagtcacatgacaacaactttaccagttacgccaaggttaccc 29366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 4495783 - 4495842
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  4495783 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcgcgaaggttaccc 4495842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 25517301 - 25517348
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  25517301 tgaccttccagtcacatgacaacaactttaccagttgcgccaaggtta 25517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 9607255 - 9607182
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || || |||||||| |||||| |||||||||||||||| |||| ||||||||||||||    
T  9607255 gctgtttccaggactt--gaaccgatgacctttcagtcacatgacaacaactttacaagttgcgccaaggttaccc 9607182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 46421142 - 46421215
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||  ||||| ||||||||||||||||||||| ||||||||||||||    
T  46421142 gctgtttccaggactt--gaacccgtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttaccc 46421215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 7697004 - 7697063
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||  ||||| ||||||||||||||||||||| ||||||||||||||    
T  7697004 ttgaacccgtgaccttttagtcacatgacaacaactttaccagttgcgccaaggttaccc 7697063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 16735479 - 16735420
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||| || |||||| ||||||||||||||||||||| ||||||||||||||    
T  16735479 ttgaacccgtgacgttacagtcacatgacaacaactttaccagttgcgccaaggttaccc 16735420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 1217142 - 1217069
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||| | ||||| ||||||||||||||| ||||||||||||||    
T  1217142 gctgtttccaggactt--gaacccgtgacctttcagtgacatgactacaactttaccagttgcgccaaggttaccc 1217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 6411926 - 6411999
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| ||||||||  || ||||||||||  |||| | ||||||||||||||||||||| || |||||||||||    
T  6411926 gctgtttacaagactt--gaacccatgacctatcagttacatgacaacaactttaccagttgcgtcaaggttaccc 6411999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 21875041 - 21874997
Alignment:
Q  119 cagtcatatgacaacaactttaccagttacgccaaggttacccga 163  Q
    |||||| ||||||||||||||||||||| || |||||||||||||    
T  21875041 cagtcacatgacaacaactttaccagttgcgtcaaggttacccga 21874997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 22609818 - 22609746
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||||  || ||| | ||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  22609818 gctgtttccaagactt--gaacccgttaccttacagtcacatgacaacaactttacc-gttgcgccaaggttaccc 22609746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 12914163 - 12914213
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| | |||| || |||||||||||||||||| ||||||||||||||    
T  12914163 tgacctttcggtcacattacaacaactttaccagttgcgccaaggttaccc 12914213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 39203545 - 39203495
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| |||||||||||||||| ||||  |||||||||||||    
T  39203545 tgacctttcagtcacatgacaacaactttacaagttgtgccaaggttaccc 39203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 11461771 - 11461804
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagtt 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  11461771 accttcctgtcatatgacaacaactttaccagtt 11461804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 13628897 - 13628971
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaac-tttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||| ||||||||||  |||||||||||||    
T  13628897 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaacttttaccagttgtgccaaggttaccc 13628971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5173839 - 5173899
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaac-tttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||| ||||| |||| ||||||||||||||    
T  5173839 ttgaacccgtgacctttcagtcacatgacaacaacttttacgagttgcgccaaggttaccc 5173899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 12525436 - 12525389
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||||||||||||   |||||||||| ||||||||||||||    
T  12525436 tgacctttcagtcatatgacaac---tttaccagttgcgccaaggttaccc 12525389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 22123044 - 22123092
Alignment:
Q  112 gaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||||| |||||| |||||||||| |||||||||  |||||||||||||    
T  22123044 gacctttcagtcacatgacaacaaatttaccagtggcgccaaggttacc 22123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 26869736 - 26869696
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgcc 151  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  26869736 tgacctttcagtcacatgacaacaactttaccagttgcgcc 26869696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 44380352 - 44380428
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    |||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||||||||||| ||||||    
T  44380352 ttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatccg 44380428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8809719 - 8809639
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8809719 atatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtgctat 8809639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 35998344 - 35998428
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccga 85  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35998344 atatatgttttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacacaggtgctatccga 35998428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 22930172 - 22930245
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  22930172 gctgtttccaggactt--gaacccatgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 22930245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 32632661 - 32632734
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  32632661 gctgtttccaggactt--gaacccgtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttaccc 32632734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 35534501 - 35534576
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||| |||||||||||| |||| |||||||||| ||| ||||||||||| ||||| ||||||| ||||||    
T  35534501 ttttttaaagggtgtgccacatgacacaccttaattggccaatattatataacattatggttcacaagttctatcc 35534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 19414478 - 19414420
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  19414478 ttgaacccgtgacctttcagtcatatgacaacaactttaccaattacgccaaggttacc 19414420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 20004197 - 20004270
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  20004197 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 20004270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 27201700 - 27201627
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||    
T  27201700 gctgtttccaggactt--gaacccatgacctttcagtcacatgacaacaactttaccatttacgctaaggttaccc 27201627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 34725201 - 34725274
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  34725201 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 34725274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 19932871 - 19932930
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||    
T  19932871 ttgaacccatgacctttcagtcacatgacaacaactttaccagttgcgccaaggtaaccc 19932930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 46991843 - 46991784
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  46991843 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 46991784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 18742079 - 18742137
Alignment:
Q  101 tttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttac 159  Q
    ||||| ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  18742079 tttgaacccttgacctttcagtcacatgacaacaactttaccagttgcgccaaggttac 18742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 18944673 - 18944623
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  18944673 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 18944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 46248058 - 46248131
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||||  || ||| |||| || |||||| |||||||||||||||||||||  |||||||||||||    
T  46248058 gctgtttccaagactt--gaacccgtgacatttcagtcacatgacaacaactttaccagttgagccaaggttaccc 46248131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 34714662 - 34714603
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| || ||| ||||||||||||||||||||| ||||||||||||||    
T  34714662 ttgaacccgtgacctttcaatcacatgacaacaactttaccagttgcgccaaggttaccc 34714603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 40424769 - 40424722
Alignment:
Q  114 ccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  40424769 cctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 40424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 47214550 - 47214491
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| |||||| |||||||    
T  47214550 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttaccc 47214491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 14617068 - 14617018
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  14617068 tgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 14617018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 25290193 - 25290143
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  25290193 tgacctttcagtcacatgacaacaactttacctgttgcgccaaggttaccc 25290143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 45812663 - 45812713
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  45812663 tgacctttcagtcacatgacaacaactttatcagttgcgccaaggttaccc 45812713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 30395833 - 30395903
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||| |||||  || ||| |||||||  ||||| ||||||||||||||||||||| |||||||||||    
T  30395833 gctgtttccaggactt--gaacccgtgaccttaaagtcacatgacaacaactttaccagttgcgccaaggtta 30395903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 4430154 - 4430197
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaag 154  Q
    |||||||||||||| ||||||||||||||||||| | |||||||    
T  4430154 tgaccttccagtcacatgacaacaactttaccagctgcgccaag 4430197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 6925139 - 6925096
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagt 145  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||    
T  6925139 ttgaacccgtgaccttccagtcacatgacaacaactttaccagt 6925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 8197082 - 8197023
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||| ||||||| | ||||||||||||    
T  8197082 ttgaacccgtgacctttcagtcacatgacaacaacttgaccagttgcaccaaggttaccc 8197023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 10668235 - 10668200
Alignment:
Q  126 atgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10668235 atgacaacaactttaccagttgcgccaaggttaccc 10668200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 27474333 - 27474261
Alignment:
Q  87 ctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||||||||  || ||  ||||||| |||||| |||||||||||||||||||||  || ||||||||||    
T  27474333 ctgtttccaagactt--gaacctgtgacctttcagtcacatgacaacaactttaccagttgagctaaggttaccc 27474261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 38478399 - 38478458
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| |||||||||| ||||| |||| ||||||||||||||    
T  38478399 ttgaacccgtgacctttcagtcacatgacaacaagtttactagttgcgccaaggttaccc 38478458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 23768448 - 23768498
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| || | |||||||||    
T  23768448 tgaccttacagtcacatgacaacaactttaccagttgcgtcgaggttaccc 23768498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 41319934 - 41319984
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| |||||||||||||||||||||  | |||||||||||    
T  41319934 tgacctttcagtcacatgacaacaactttaccagttgtgtcaaggttaccc 41319984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 45402122 - 45402077
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaaggttac 159  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  45402122 accttcca-tcacatgacaacaactttaccagttgcgccaaggttac 45402077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 21723688 - 21723644
Alignment:
Q  117 tccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||| |||||||||||||||||||||  || ||||||||||    
T  21723688 tccagtcacatgacaacaactttaccagttgtgcgaaggttaccc 21723644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 52012870 - 52012952
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  52012870 atatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatcc 52012952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9799442 - 9799359
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9799442 atatatgttttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtgctatccg 9799359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 46720215 - 46720290
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| | |||||||||||    
T  46720215 ttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggtaaagaagtgctatcc 46720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 20225000 - 20224941
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  20225000 ttgaacccatgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 20224941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 5313113 - 5313173
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacccg 162  Q
    |||| ||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  5313113 ttgaacccgtgacctttcaatcacatgacaacaactttaccagttacgccaaggttacccg 5313173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 5648289 - 5648216
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  5648289 gctgtttccaggactt--gaacccgtgaccttacagtcacatgacaacaactttaccagttgcgccaaggttaccc 5648216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 6430730 - 6430803
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  6430730 gctgtttccatgactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 6430803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 16408708 - 16408777
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtt 157  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  16408708 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggtt 16408777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 48598928 - 48599001
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  48598928 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 48599001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 13256524 - 13256575
Alignment:
Q  110 atgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  13256524 atgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 13256575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 21646971 - 21646924
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  21646971 tgaccttccagtcacatgacaacaactttaccagttgcgccaaggtta 21646924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 23501809 - 23501750
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  23501809 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 23501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47943251 - 47943302
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgt 52  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  47943251 atatatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 14983841 - 14983791
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  14983841 tgaccttccaatcatatgacaacaactttaccagttctgccaaggttaccc 14983791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 20405100 - 20405050
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  20405100 tgaccttccagtcacatgacaacaactttaccagttgcgtcaaggttaccc 20405050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 14590844 - 14590795
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  14590844 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacc 14590795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 5306768 - 5306841
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| |||||| |||||||||||||| ||||||||||||||    
T  5306768 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacatcaactttaccagttgcgccaaggttaccc 5306841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 10660409 - 10660361
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  10660409 acctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10660361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 10874554 - 10874506
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  10874554 acctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10874506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 55766588 - 55766644
Alignment:
Q  105 accccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||| ||||||||| |||| ||||||||||||||||||||| || |||||||||||    
T  55766588 accccgtgaccttccggtcacatgacaacaactttaccagttgcgtcaaggttaccc 55766644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 11054265 - 11054324
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| |||||| |||||||    
T  11054265 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttaccc 11054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 16911578 - 16911519
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||  ||||| ||||||||||||||||||||| ||||||||||||||    
T  16911578 ttgaacccgtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttaccc 16911519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 17315417 - 17315476
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  17315417 ttgaacccgtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 17315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 30639387 - 30639337
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| | ||||||||||||||||||| ||||||||||||||    
T  30639387 tgacctttcagtcacaagacaacaactttaccagttgcgccaaggttaccc 30639337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 47528656 - 47528706
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  47528656 tgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 47528706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 487242 - 487306
Alignment:
Q  88 tgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaagg 155  Q
    ||||||||||||||  || ||| ||||||| |||||| ||||||||||||||||| ||||||||||||    
T  487242 tgtttccaagactt--gaacccgtgacctttcagtcacatgacaacaactttacc-gttacgccaagg 487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 8473750 - 8473790
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaa 153  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  8473750 accttccggtcatatgacaacaactttaccagttgcgccaa 8473790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 18969738 - 18969698
Alignment:
Q  121 gtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  18969738 gtcacatgacaacaactttaccagttgcgccaaggttaccc 18969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 55830849 - 55830899
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||  ||| ||||||||||||||||||||| || |||||||||||    
T  55830849 tgaccttccgatcacatgacaacaactttaccagttgcgtcaaggttaccc 55830899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 35567200 - 35567146
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttacc 142  Q
    ||||||||||||||||  || ||||||||||| |||| | |||||||||||||||||    
T  35567200 gctgtttccaagactt--gaacccatgacctttcagttacatgacaacaactttacc 35567146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 1796648 - 1796724
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    ||||||||||  |||| ||| || ||||| ||||||||  |||| |||||| ||| |||||||||||||| ||||||    
T  1796648 ttttttaaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatccg 1796724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 12473802 - 12473878
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| |||||||||||||||||||||    
T  12473802 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatccg 12473878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 12528211 - 12528287
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| |||||||||||||||||||||    
T  12528211 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatccg 12528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 30352735 - 30352767
Alignment:
Q  127 tgacaacaactttaccagttacgccaaggttac 159  Q
    |||||||||||||||||||| ||||||||||||    
T  30352735 tgacaacaactttaccagttgcgccaaggttac 30352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34245659 - 34245741
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  34245659 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtacacaagtgttatcc 34245741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 1346994 - 1346921
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  1346994 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 1354883 - 1354933
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  1354883 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1354933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 1941861 - 1941812
Alignment:
Q  112 gaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  1941861 gaccttccagtcagatgacaacaactttaccagttgcaccaaggttaccc 1941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 12222022 - 12222088
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaag 154  Q
    ||||||||||||||||  || ||| ||||||| |||||| ||||||||||||||||||||| |||||||    
T  12222022 gctgtttccaagactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaag 12222088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 17330555 - 17330515
Alignment:
Q  41 attggctaatgttatataacataatggtacacaagtgctat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  17330555 attggctaatattatataacataatggtacacaagtgctat 17330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 3815196 - 3815255
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||| || |||||| ||||||||||||||||||||| ||||||||||||||    
T  3815196 ttgaacccgtgacatttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 3815255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 14975208 - 14975255
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  14975208 tgaccttccagtcacatgacaacaactttaccggttgcgccaaggtta 14975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 8409250 - 8409200
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| || |||||||||||||||||| ||||||||||||||    
T  8409250 tgacctttcagtcacattacaacaactttaccagttgcgccaaggttaccc 8409200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 24734640 - 24734591
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    ||||||| |||||| ||||||||||||||||||||| |||||| ||||||    
T  24734640 tgacctttcagtcacatgacaacaactttaccagttgcgccaatgttacc 24734591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 15866156 - 15866215
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||| || ||| ||| |||||||||||||||||  |||||||||||||    
T  15866156 ttgaacccatgacctttcaatcacatgccaacaactttaccagttgggccaaggttaccc 15866215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 33922964 - 33923006
Alignment:
Q  119 cagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||    
T  33922964 cagtcaaatgacaacaactttaccggttgcgccaaggttaccc 33923006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 20400674 - 20400625
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    ||||||| |||||| |||||||||||| ||||| || |||||||||||||    
T  20400674 tgacctttcagtcacatgacaacaactataccaattgcgccaaggttacc 20400625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 11113650 - 11113718
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagt 76  Q
    ||||||||||  || |||||||| |||| |||||||| | ||||||||||| ||| |||||||| ||||    
T  11113650 ttttttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3668089 - 3668008
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatc 82  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  3668089 atatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtgctatc 3668008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 8455421 - 8455494
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  8455421 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 8455494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10163574 - 10163641
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggt 68  Q
    |||||||||||||||||| ||||| ||||| || | |||||||| |||||||||||||||||||||||    
T  10163574 atatatgttttttaaagtatgtgctacatggcataccttaattgactaatgttatataacataatggt 10163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 11514452 - 11514393
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  11514452 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 11514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 25079837 - 25079896
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  25079837 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 25079896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 12024023 - 12024096
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  12024023 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 12024096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 14530348 - 14530275
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  14530348 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 14530275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 23397796 - 23397723
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  23397796 gctgtttccaggactt--gaacccatgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 23397723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 7214563 - 7214491
Alignment:
Q  87 ctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||||||||  || ||||||||||| |||||| |||||||||||||||||||||  ||||| |||||||    
T  7214563 ctgtttccaagactt--gaacccatgacctttcagtcacatgacaacaactttaccagttgtgccaaagttaccc 7214491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 34392154 - 34392080
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatc 82  Q
    |||||||||| |||||||||||| |||||  |||||||  |||| |||||| ||| |||||||||||||||||||    
T  34392154 ttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 22371087 - 22371014
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||| ||||||| |||||||||||||||||||||  |||||||||||||    
T  22371087 gctgtttccaggactt--gaacccgtgacctcccagtcacatgacaacaactttaccagttgggccaaggttaccc 22371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 27573629 - 27573581
Alignment:
Q  110 atgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  27573629 atgacctttcagtcacatgacaacaactttaccagttgcgccaaggtta 27573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 10543714 - 10543655
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  10543714 ttgaacccgtgacctttcagtcacatgacaacaactttatcagttgcgccaaggttaccc 10543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 17705511 - 17705452
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  17705511 ttgaacccgtgaccttctagtcacatgacaacaactttaccagttgcaccaaggttaccc 17705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 21779378 - 21779437
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||| ||||||| ||||||||||||||    
T  21779378 ttgaacccgtgacctttcagtcacatgacaacaacttcaccagttgcgccaaggttaccc 21779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 25249856 - 25249915
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| |||||||||||||||||| || ||||||||||||||    
T  25249856 ttgaacccgtgaccttacagtcacatgacaacaactttaccaattgcgccaaggttaccc 25249915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 39189557 - 39189599
Alignment:
Q  119 cagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  39189557 cagtcacatgacaacaactttaccagttgcgccaaggttaccc 39189599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 9671182 - 9671137
Alignment:
Q  116 ttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  9671182 ttccagtcacatgacaacaactttaccggttgcgccaaggttaccc 9671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 4775733 - 4775809
Alignment:
Q  8 ttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatccg 84  Q
    ||||||||||  ||||||||||| ||||| ||||||||  |||| |||||| ||| ||||||||||| || ||||||    
T  4775733 ttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatccg 4775809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 14544068 - 14544020
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||| |||||| |||||||||||||||||| || ||||||||||||||    
T  14544068 acctttcagtcacatgacaacaactttaccaattgcgccaaggttaccc 14544020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 17668018 - 17667974
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagtt 146  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  17668018 ttgaacccgtgaccttccagtcacatgacaacaactttaccagtt 17667974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 5841044 - 5840985
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||| || || | ||||||||||||    
T  5841044 ttgaacccgtgaccttccagtcacatgacaacaactttatcatttgcaccaaggttaccc 5840985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 19977833 - 19977892
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| | |||| ||||||||||||| ||||||| ||||||||||||||    
T  19977833 ttgaacccgtgacctttcggtcacatgacaacaacttcaccagttccgccaaggttaccc 19977892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 9207278 - 9207308
Alignment:
Q  53 tatataacataatggtacacaagtgctatcc 83  Q
    |||||||||||||||||||||||||||||||    
T  9207278 tatataacataatggtacacaagtgctatcc 9207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 17896266 - 17896216
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| | |||| ||||||||||||||||||||| || |||||||||||    
T  17896266 tgacctttcggtcacatgacaacaactttaccagttgcgtcaaggttaccc 17896216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 23863875 - 23863801
Alignment:
Q  9 tttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||| |||||||||||| ||||   |||||||  |||| |||||| ||| ||||||||| ||||||||||    
T  23863875 tttttaaagggtgtgccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatcc 23863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 39914425 - 39914467
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccag 144  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  39914425 ttgatcccgtgaccttccagtcacatgacaacaactttaccag 39914467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 24860116 - 24860157
Alignment:
Q  113 accttccagtcatatgacaacaactttaccagttacgccaag 154  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  24860116 accttccagtcacatgacaacaattttaccagttgcgccaag 24860157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 40416990 - 40417031
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttacca 143  Q
    |||| ||| |||||||||||||| ||||||||||||||||||    
T  40416990 ttgaacccgtgaccttccagtcacatgacaacaactttacca 40417031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 17623580 - 17623536
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagtt 146  Q
    |||| ||| |||||||||||||  |||||||||||||||||||||    
T  17623580 ttgaacccgtgaccttccagtcgcatgacaacaactttaccagtt 17623536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 24200730 - 24200803
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||| || |||||| ||||||||||||||||||||| |  |||||||||||    
T  24200730 gctgtttccaggactt--gaacccgtgacttttcagtcacatgacaacaactttaccagttgcatcaaggttaccc 24200803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 27466266 - 27466306
Alignment:
Q  119 cagtcatatgacaacaactttaccagttacgccaaggttac 159  Q
    |||||| ||||||||||||||||||||| |||||| |||||    
T  27466266 cagtcacatgacaacaactttaccagttgcgccaatgttac 27466306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 44604861 - 44604825
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagtta 147  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  44604861 tgaccttccagtcacatgacaacaactttagcagtta 44604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 36720826 - 36720753
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36720826 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttacgccaaggttaccc 36720753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 7136648 - 7136707
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7136648 ttgaacccatgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 7136707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 35261695 - 35261636
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35261695 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 35261636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 12670353 - 12670426
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  12670353 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 12670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 28817731 - 28817804
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  28817731 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 28817804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 30454200 - 30454273
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  30454200 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 30454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 28407446 - 28407379
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaagg 155  Q
    |||||||||| |||||  || ||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  28407446 gctgtttccaggactt--gaacccgtgaccttccagtcacatgacaacaactttaccagttgcgccaagg 28407379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 44530177 - 44530106
Alignment:
Q  88 tgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||  || ||| |||||||| ||||| |||||| |||||||||||||| ||||||||||||||    
T  44530177 tgtttccaagactt--gaacccgtgaccttctagtcacatgacagcaactttaccagttgcgccaaggttaccc 44530106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 6760852 - 6760786
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaag 154  Q
    |||||||||| |||||  || ||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  6760852 gctgtttccaggactt--gaacccgtgaccttctagtcatatgacaacaactttaccagttgcgccaag 6760786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 20869601 - 20869671
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggtta 158  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  20869601 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggtta 20869671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 25250529 - 25250480
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  25250529 tgaccttccagtcacatgacaacaactttaccagttgtgccaaggttacc 25250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 29521790 - 29521863
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  29521790 gctgtttccaggactt--gaacccgtgaccttccagtcacacgacaacaactttatcagttgcgccaaggttaccc 29521863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 39461101 - 39461174
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||  ||||||||||||||||||||| ||||||||||||||    
T  39461101 gctgtttccaggactt--gaacccgtgacctttcagtctcatgacaacaactttaccagttgcgccaaggttaccc 39461174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 13160718 - 13160659
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| |||| |||||||||    
T  13160718 ttgaacccgtgaccttacagtcacatgacaacaactttaccagttgcgccgaggttaccc 13160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 24245467 - 24245408
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  24245467 ttgaacccgtgacctttcagtcacatgacaacaactttaccagttgccccaaggttaccc 24245408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1514895 - 1514951
Alignment:
Q  1 atatatgttttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatat 57  Q
    |||||| ||||||||| ||||| ||| |||||||| ||||||||| |||||||||||    
T  1514895 atatatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 2626549 - 2626476
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| | |||| |||||||||||||||||| || ||||||||||||||    
T  2626549 gctgtttccaggactt--gaacccgtgacctttcggtcacatgacaacaactttaccaattgcgccaaggttaccc 2626476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 5688848 - 5688801
Alignment:
Q  109 catgaccttccagt--catatgacaacaactttaccagttacgccaag 154  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||    
T  5688848 catgaccttccagtgacatatgacaacaactttaccagttgcgccaag 5688801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 17823606 - 17823533
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| | |||| ||||||||||||||||||||| ||||||| ||||||    
T  17823606 gctgtttccaggactt--gaacccgtgacctttcggtcacatgacaacaactttaccagttgcgccaagattaccc 17823533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 26954162 - 26954089
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| |||||||| | ||| |||||||||||||||||| ||||||||| |||||||    
T  26954162 gctgtttccaggactt--gaacccgtgaccttctaatcacatgacaacaactttaccaattacgccaaagttaccc 26954089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 20284178 - 20284250
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||| ||| || ||||||||||    
T  20284178 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 20284250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 21070807 - 21070879
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||| ||| || ||||||||||    
T  21070807 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 21070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 45071281 - 45071222
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||| || ||| ||||||||||||||||||||  ||||||||||||||    
T  45071281 ttgaacccgtgaccttacaatcacatgacaacaactttaccagtatcgccaaggttaccc 45071222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 24337902 - 24337828
Alignment:
Q  9 tttttaaagtgtgtgccacatgtcacaacttaattggctaatgttatataacataatggtacacaagtgctatcc 83  Q
    ||||||||| |||||||||||  ||||   |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 18164864 - 18164937
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||| ||| ||| ||||||| ||||||    
T  18164864 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaacttcaccggttgcgccaagattaccc 18164937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 23286431 - 23286471
Alignment:
Q  121 gtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||||||||||||| || |||||||||||    
T  23286431 gtcacatgacaacaactttaccagttgcgacaaggttaccc 23286471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 40605039 - 40605083
Alignment:
Q  117 tccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||| ||||||||||||||||||||| |||||| |||||||    
T  40605039 tccaatcacatgacaacaactttaccagttgcgccaaagttaccc 40605083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 24886 - 24945
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  24886 ttgaacccatgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 24945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 46847 - 46794
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaagg 155  Q
    |||| ||| |||||||| ||||| |||||||||||||||||| || ||||||||    
T  46847 ttgaacccgtgaccttctagtcacatgacaacaactttaccaattgcgccaagg 46794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 30586 - 30536
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  30586 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 30536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 83903 - 83832
Alignment:
Q  88 tgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||||||||||  || ||| ||||||| |||||| |||||||||||||||| |||| ||||||||||||||    
T  83903 tgtttccaagactt--gaacccgtgacctttcagtcacatgacaacaactttactagttgcgccaaggttaccc 83832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 226534 - 226583
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttacc 160  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  226534 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacc 226583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 10153 - 10226
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| || |||||||||||    
T  10153 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 10226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 20481 - 20554
Alignment:
Q  86 gctgtttccaagacttttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    |||||||||| |||||  || ||| ||||||| |||||| ||||||||||||||||||||| || |||||||||||    
T  20481 gctgtttccaggactt--gaacccgtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 20554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 13151 - 13201
Alignment:
Q  111 tgaccttccagtcatatgacaacaactttaccagttacgccaaggttaccc 161  Q
    ||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  13151 tgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 13201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 10826 - 10773
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaagg 155  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||| | ||||||    
T  10826 ttgaacccgtgaccttccagtcacatgacaacaactttaccagttgcaccaagg 10773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 1704 - 1758
Alignment:
Q  102 ttgaccccatgaccttccagtcatatgacaacaactttaccagttacgccaaggt 156  Q
    |||| ||||||||||| |||||| |||||||||||||||||| || || ||||||    
T  1704 ttgaacccatgacctttcagtcacatgacaacaactttaccaattgcgtcaaggt 1758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University