View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17631_low_2 (Length: 391)
Name: NF17631_low_2
Description: NF17631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17631_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 43775729 - 43775364
Alignment:
| Q |
8 |
gacatcatcaaaatctacggcatcacatcacggagctatgaaa-ggataaatttgcaatagtacgttatatttggctgttgaatgatgcttgggttgcat |
106 |
Q |
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| T |
43775729 |
gacatcattagaatctactacatcacatcacgatgctatgaaatggataaatttgtaatagtgcattatattttgctctgcagggatgcttgggttgcat |
43775630 |
T |
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| Q |
107 |
aacactgacattttcatctaaaaatatatctatttggaaaccaatgccgaatctcaaacaaacaaaattttcatttagaaaactaccaagcatatcattg |
206 |
Q |
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| T |
43775629 |
gatactggcattttcgtctaaagatatatctgtttgaaaaccaatgccaaatctcaaacaaacaaaattttcatttagaaaattactaatcatataattg |
43775530 |
T |
|
| Q |
207 |
ttaacttaagtaaatttagaagacaaaagatgcagggaactcacatactgcgttgcaatacaatgtcatgcatgctaaacacttacaaggatgatttttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43775529 |
ttaacttaagtaaatttagaagacaaaagatgcagggaacccatatgctgcgttgcaatacaatgccatgcatgctaaacacttacaaggatgatttttg |
43775430 |
T |
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| Q |
307 |
tttcgtccaactccctctagattttcaacaacttatcagcctctgcagggtcctggagatttgaca |
372 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43775429 |
tttcgtccaactccctctggattttcaacaacttatcagcctctgcagggtcctggagatttgaca |
43775364 |
T |
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