View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17631_low_4 (Length: 374)

Name: NF17631_low_4
Description: NF17631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17631_low_4
NF17631_low_4
[»] chr7 (4 HSPs)
chr7 (19-308)||(13695638-13695925)
chr7 (19-156)||(13695998-13696133)
chr7 (19-70)||(3312659-3312710)
chr7 (19-70)||(3310958-3311009)
[»] scaffold0094 (1 HSPs)
scaffold0094 (18-105)||(48239-48327)
[»] chr6 (1 HSPs)
chr6 (19-105)||(19566901-19566990)
[»] chr3 (3 HSPs)
chr3 (19-102)||(18534442-18534526)
chr3 (25-64)||(3593099-3593138)
chr3 (47-105)||(30993287-30993346)
[»] scaffold0005 (1 HSPs)
scaffold0005 (35-70)||(171485-171520)
[»] chr4 (1 HSPs)
chr4 (35-70)||(14645770-14645805)
[»] chr2 (2 HSPs)
chr2 (19-61)||(15266936-15266978)
chr2 (27-103)||(16093511-16093588)
[»] chr5 (1 HSPs)
chr5 (48-105)||(39436009-39436065)
[»] chr1 (1 HSPs)
chr1 (19-64)||(21494380-21494425)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 13695925 - 13695638
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaagggg-gagtctatcttcaccacaagggctgcatgaacatatgggtactactgaagggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| |   |||||||    
T  13695925 attcaaccgtagaaattcatcaattcggcaaactagaggtaaggggagagtctatcttcaccacaagggatgcatgaacatatcggtagt---gaagggt 13695829  T
Q  118 gttgtttcttattatttatcatgattcttttcataaattcatgttgtgattttggatatattattgtgaattcattactttcatctgctaaattcatgat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  13695828 gttgtttcttattatttatcatgattcttttcataaattcatgttgtgattttggatatattattgtgaattcattactttcatatgctaaatttatgat 13695729  T
Q  218 tgaaatttagtttctaattatgtgttaagaacgattgctgtatatatgatgctctcgtaaaccgttatgaaactccatgctttcttttggt 308  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13695728 tgaaatatagtttctaattatgtgttaagaacgattgctgtatatatgatgctctcgtaaaccgttatgaaactccatgccttcttttggt 13695638  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 13696133 - 13695998
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaagggg-gagtctatcttcaccacaagggctgcatgaacatatgggtactactgaagggt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||| |   |||||||    
T  13696133 attcaaccgtagaaattcatcaattcggcaaactagagggaaggggagagtctatcttcatcacaagggatgcatgaacatatgggtagt---gaagggt 13696037  T
Q  118 gttgtttcttattatttatcatgattcttttcataaatt 156  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13696036 gttgtttcttattatttatcatgattcttttcataaatt 13695998  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3312710 - 3312659
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaagggggagtct 70  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  3312710 attcaaccgtaggaagtcatcaattcggcaaactagagataagggggagtct 3312659  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3311009 - 3310958
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaagggggagtct 70  Q
    ||||||| |||| || ||||||||||| ||||||||||||||||||||||||    
T  3311009 attcaacagtaggaagtcatcaattcgacaaactagaggtaagggggagtct 3310958  T

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Target: scaffold0094 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 48327 - 48239
Alignment:
Q  18 aattcaaccgtagaaattcatcaattcggcaaactagaggtaag-ggggagtctatcttcaccacaagggctgcatgaacatatgggta 105  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| | ||||||| ||||  || |||| ||||||||||    
T  48327 aattcaaccgtaggaattcatcaattcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggta 48239  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 19566901 - 19566990
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggc-aaactagaggtaa--gggggagtctatcttcaccacaagggctgcatgaacatatgggta 105  Q
    ||||||||||||||||||||| |||| || |||||||||| ||  |||||||||| | ||||||| ||||| ||  ||||||||||||||    
T  19566901 attcaaccgtagaaattcatctattcagcaaaactagaggcaagggggggagtctgtattcaccataagggttgtgtgaacatatgggta 19566990  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 18534442 - 18534526
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaa-ctagaggtaagggggagtctatcttcaccacaagggctgcatgaacatatgg 102  Q
    |||||||| ||| || |||||||||  ||||| |||||||||||||||||||| | ||||||| ||||  || ||||||||||||    
T  18534442 attcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataaggattgtatgaacatatgg 18534526  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 3593138 - 3593099
Alignment:
Q  25 ccgtagaaattcatcaattcggcaaactagaggtaagggg 64  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  3593138 ccgtaggaaatcatcaattcggcaaactagaggtaagggg 3593099  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 30993287 - 30993346
Alignment:
Q  47 caaactagaggtaaggggg-agtctatcttcaccacaagggctgcatgaacatatgggta 105  Q
    ||||||||||||||||||| ||||| | ||||||| ||||| || |||||||||||||||    
T  30993287 caaactagaggtaaggggggagtctctattcaccataagggttgtatgaacatatgggta 30993346  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 171485 - 171520
Alignment:
Q  35 tcatcaattcggcaaactagaggtaagggggagtct 70  Q
    |||||||||||| |||||||||||||||||||||||    
T  171485 tcatcaattcggaaaactagaggtaagggggagtct 171520  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 14645805 - 14645770
Alignment:
Q  35 tcatcaattcggcaaactagaggtaagggggagtct 70  Q
    |||||||||||| |||||||||||||||||||||||    
T  14645805 tcatcaattcggaaaactagaggtaagggggagtct 14645770  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 15266936 - 15266978
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaag 61  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  15266936 attcaacggtaggaattcatcaattcgacaaactagaggtaag 15266978  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 16093588 - 16093511
Alignment:
Q  27 gtagaaattcatcaattcggcaaactagaggtaag-ggggagtctatcttcaccacaagggctgcatgaacatatggg 103  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||| | ||||||| ||||| || || | ||||||||    
T  16093588 gtagaaattcatcacttttgcaaactagaggtaagaggggagtctctattcaccataagggttgtataatcatatggg 16093511  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 39436009 - 39436065
Alignment:
Q  48 aaactagaggtaagggggagtctatcttcaccacaagggctgcatgaacatatgggta 105  Q
    ||||||||||||||||||||||| | ||||||| || | ||| |||||||||||||||    
T  39436009 aaactagaggtaagggggagtctctattcaccataa-gactgtatgaacatatgggta 39436065  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21494380 - 21494425
Alignment:
Q  19 attcaaccgtagaaattcatcaattcggcaaactagaggtaagggg 64  Q
    |||||| ||||| ||||||| |||||| ||||||||||||||||||    
T  21494380 attcaatcgtaggaattcatgaattcgacaaactagaggtaagggg 21494425  T

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