View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_10 (Length: 364)
Name: NF17632_high_10
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 25 - 350
Target Start/End: Complemental strand, 8005010 - 8004684
Alignment:
| Q |
25 |
gtcattactatattttgagtataaactatcaacaatcaaagtaattaaccatgtttctagaacataaaaacaaagctaaaccaagattcccaacatgtac |
124 |
Q |
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| T |
8005010 |
gtcattactatattttgaatataaactatcaacaatcaaagtaattaaccatgtttctagaacataaaaacaaagctaaaccaagattcccaacatgtac |
8004911 |
T |
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| Q |
125 |
catgggaccaaaaaagtaaatctggtgaattnnnnnnnn-tactaatcattctgcataagctccatcaaaattgaaaccatcaaaaccacctccattgtt |
223 |
Q |
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| T |
8004910 |
catgggagcaaaaaagtaaatctggtgaattaaaaaaaaatactaatcattctgcataagctccatcaaaattgaaaccatcaaaaccacctccattgtt |
8004811 |
T |
|
| Q |
224 |
agccatacctccattgttacccagatcatcgtccagacctccattgttacccagacagacctccattgttaaactcagtcatcaaggtaataataagacc |
323 |
Q |
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| T |
8004810 |
agccatacctccattgttacccagatcatcgtccagacctccattgttacccagacagacctccattgttaaactcagtcatcaaggtaataataagacc |
8004711 |
T |
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| Q |
324 |
cagcattcttttgttctctgtcctttg |
350 |
Q |
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| T |
8004710 |
cagcattcttttgttctctgtcctttg |
8004684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 51519034 - 51518977
Alignment:
| Q |
293 |
taaactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctttg |
350 |
Q |
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| T |
51519034 |
taaactcagtcatcgaggtaataataagagccagcattcttttgctctctgtcctttg |
51518977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 1300120 - 1300173
Alignment:
| Q |
295 |
aactcagtcatcaaggtaataataagacccagcattcttttgttctctgtcctt |
348 |
Q |
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| T |
1300120 |
aacttagtcatcaaggtaataataagtcccagcaagcttttgctctctatcctt |
1300173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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