View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_11 (Length: 363)
Name: NF17632_high_11
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 7703589 - 7703937
Alignment:
| Q |
1 |
cgtttgaaagagacacaaaagtgaaaaggccgaaaaacaattattggtattacaagtggaaatagaattgaaactaatatggcaaactgaattagagaaa |
100 |
Q |
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| T |
7703589 |
cgtttgaaagagacacaaaagtgaaaaggccgaaaaacaattattggtattacaagtggaaatagaattgaaactaatatggcaaactgaattagagaaa |
7703688 |
T |
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| Q |
101 |
gactcggtttctggaaaatcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaattagaagtaaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703689 |
gactcggtttctggaaaatcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaattagaagtaaagac |
7703788 |
T |
|
| Q |
201 |
agcaacatatcttggaactgaaattaaattggcatgaaagttagtaacaacaaaaatactgtgtt-ttagaatgaaatgcacatgaagcttttgtcttag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
7703789 |
agcaacatatcttggaactgaaattaaattggcatgaaagttagtaacaacaaaaatactttgttggtagaatgaaatgcacatgaagcttttgtcttag |
7703888 |
T |
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| Q |
300 |
actgctgaagcaaattcatgagactgttgtattgatcttgtgtaaaccc |
348 |
Q |
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| T |
7703889 |
actgctgaagcaaattcatgagactgttgtattgatcttgtgtaaaccc |
7703937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 38823017 - 38822950
Alignment:
| Q |
119 |
tcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaa |
186 |
Q |
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| T |
38823017 |
tcaattatgtagagaccaccaaccaatctagctgtaccaatcgtcttcttggtagtttcctgcaaaaa |
38822950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 17884307 - 17884374
Alignment:
| Q |
119 |
tcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaa |
186 |
Q |
| |
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|||||| |||||| || |||||| ||||||| |||||||||| || |||||||||| ||||||||||| |
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| T |
17884307 |
tcaattatgtagagaccaccaaccaatctagctgtaccaatcgtcttcttggtagtttcctgcaaaaa |
17884374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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