View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_13 (Length: 316)
Name: NF17632_high_13
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 47583603 - 47583888
Alignment:
| Q |
20 |
tagatgtatttttcagcgcgagttaacattgtcatttattttgaaatttccttcannnnnnnnaacaacgaacaatat--tttattcaaatagataaaga |
117 |
Q |
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| T |
47583603 |
tagatgtatttttcagcgcaagttaacattgtcatttattttgaaatttccttcattttttttaacaacgaacaaaatcttttattcaaatagataa-ga |
47583701 |
T |
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| Q |
118 |
tataagtaataatactctatccactcaaaattcccaatacatcatttcctaccgatacaatctacacaaaataaacaaggata--cccctatttttcttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
47583702 |
tataagtaataatactctatccactcaaaattcccaatacatcatttcctaccgatacaatctacacaaaataaacaaggatatacccctatttt-cttc |
47583800 |
T |
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| Q |
216 |
tccaaaaccaattccaagacaagtgcttgatcttacatactacctcttccacctttgcatgttttccccaaaatatgatgtcatttct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583801 |
tccaaaaccaattccaagacaagtgcttgatcttacatactacctcttccacctttgcatgttttccccaaaatatgatgtcatttct |
47583888 |
T |
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