View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_19 (Length: 248)
Name: NF17632_high_19
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_19 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 41075611 - 41075451
Alignment:
| Q |
38 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
137 |
Q |
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| T |
41075611 |
aaaaatgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
41075512 |
T |
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| Q |
138 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatg |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075511 |
ttcgtcataacaataactcatcctgcaggtttagtgattgataataaagaattcatatatg |
41075451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 6061 - 6220
Alignment:
| Q |
38 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
137 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6061 |
aaaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcccctgggagcttaccaacgtgaaaacatttctcccacct |
6160 |
T |
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| Q |
138 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatg |
198 |
Q |
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||| |||| || || || | |||||||||||| ||||||| |||||||||||||||||| |
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| T |
6161 |
ttcttcat-actctgcatccttctgcaggtttagagattgatgataaagaattcatatatg |
6220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 3502 - 3659
Alignment:
| Q |
38 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
137 |
Q |
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|||||||||||||| |||||| || |||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||| |||||||| |
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| T |
3502 |
aaaactgcttctctatctcttgctg--agtcctcattctttttcccatgtcttcacttttcccctgggagcttacccacgtgaaaacatttctcccacct |
3599 |
T |
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| Q |
138 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatg |
198 |
Q |
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||| | || || || || | |||||||||||| ||||||| |||||||||||||||||| |
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| T |
3600 |
ttctttat-actctgcatccttctgcaggtttagagattgatgataaagaattcatatatg |
3659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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