View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_20 (Length: 239)
Name: NF17632_high_20
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 43547091 - 43547289
Alignment:
| Q |
25 |
cttaatgagaggattgtttcatccttggcaaggagatccgttgctgcacacccttggcatgatcttgacataggtaaacgatcacggcgtgttaatagtt |
124 |
Q |
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| T |
43547091 |
cttaatgagaggattgtttcatccttggcaaggagatccgttgctgcacacccttggcatgatcttgacataggtaaacgatcacggcgtgttaatagtt |
43547190 |
T |
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| Q |
125 |
tgattacaaagtcccggtaccctgtttcttttctttacttactttgcaatcctttatttggtattctaatacttttccccaacaatgtagggactgaag |
223 |
Q |
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| T |
43547191 |
tgattacaaagtcccgttaccctgtttcttttctttacttactttgcaatcctttatttggtattctaatacttttccccaacaatgtagggactgaag |
43547289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 29367044 - 29367117
Alignment:
| Q |
28 |
aatgagaggattgtttcatccttggcaaggagatccgttgctgcacacccttggcatgatcttgacataggtaa |
101 |
Q |
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| T |
29367044 |
aatgagaggatcctttcatcattgactaggaggtctgttgctgcacacccatggcatgatcttgagataggtaa |
29367117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 45198594 - 45198674
Alignment:
| Q |
115 |
gttaatagtttgattacaaagtcccggtaccctgtttcttttctttacttactttgcaatcctttatttggtattctaata |
195 |
Q |
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| T |
45198594 |
gttaatggtttgattacaatgtcctcctactctgtttcttctctttaagtacgttggaattctttatttggtattttaata |
45198674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 49125621 - 49125685
Alignment:
| Q |
28 |
aatgagaggattgtttcatccttggcaaggagatccgttgctgcacacccttggcatgatcttga |
92 |
Q |
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| T |
49125621 |
aatgaaaggattctttcatctttgtcaaggagatcagttgctgcacacccttggcatgatcttga |
49125685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 8800731 - 8800667
Alignment:
| Q |
28 |
aatgagaggattgtttcatccttggcaaggagatccgttgctgcacacccttggcatgatcttga |
92 |
Q |
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| T |
8800731 |
aatgaaaggattctttcatctttgtcaagaagatcagttgctgctcacccttggcatgatcttga |
8800667 |
T |
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