View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17632_high_21 (Length: 232)
Name: NF17632_high_21
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 947590 - 947377
Alignment:
| Q |
1 |
cgttattctaactttacatcaccagaccatcaatgcactgcacgtgagttaaaatacatcaatggtgaagagggcaaaagcgtcaagccgtcaagtgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
947590 |
cgttattctaactttacatcaccagaccatcaatgcactgcacgttagttaaaatacatcaatggtgaagagggcaaaagcgtcaagccgtcaagtgaaa |
947491 |
T |
|
| Q |
101 |
tatgttaggtaaaataagtggatggtggtcgtgggcagtctctattgactcacaactattgtcattattatgtaattaaatctagtctagtgtttaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
947490 |
tatgttaggtaaaataagtggatggtggtcgtgggcagtctctattgactcacaactattgtcattattatgtaataaaatctagtctagtgtttaaact |
947391 |
T |
|
| Q |
201 |
tcaaaagtgaaact |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
947390 |
tcaaaagtgaaact |
947377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 2001545 - 2001599
Alignment:
| Q |
64 |
ggtgaagagggcaaaagcgtcaagccgtcaagtgaaatatgttaggtaaaataagtg |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2001545 |
ggtgaagagggcaaaag--tcaagccgtcaagtgaaatatgttgggtaaaataagtg |
2001599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 1977627 - 1977670
Alignment:
| Q |
64 |
ggtgaagagggcaaaagcgtcaagccgtcaagtgaaatatgtta |
107 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
1977627 |
ggtgaagaaggaaaaagcgtcaagccatcaagtgaaatatgtta |
1977670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University