View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_4 (Length: 484)
Name: NF17632_high_4
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 8149845 - 8149562
Alignment:
| Q |
16 |
cacagatctaagagcgtgcaaaatggtaagtaatgaatccaattctttctttttctcaaggcacattcctgggggtttacaaatacaaattccaaactca |
115 |
Q |
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| T |
8149845 |
cacagatctaagagcgtgcaaaatggtaa----tgaatccaattctttctttttctcaaggcacattcctgggggtttacaaatacaaattacaaacaca |
8149750 |
T |
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| Q |
116 |
cactcttatgtagcaggtactagctagcaatagcatgcagctatagttgttaatgtaattttcttaacttacatttaagtcatgtgctaatgaatcattg |
215 |
Q |
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| T |
8149749 |
cactcttatgtagcaggtactagctagcaatagcatgcagctatagttgttaatgtaattttcttaacttacatttaagtcatgtgataatgaatcattg |
8149650 |
T |
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| Q |
216 |
tatattgactctgttgagaagagctacctatgcttagagaccgttttggtgtctttgcagttccatgccattttaagctaagcatata |
303 |
Q |
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| T |
8149649 |
tatattgactctgttgagaagagctacctatgcttagagaccgttttcgtgtctttgcggttccatgccattttaagctaagcatata |
8149562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 301 - 469
Target Start/End: Complemental strand, 8149523 - 8149355
Alignment:
| Q |
301 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8149523 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
8149424 |
T |
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| Q |
401 |
tcatgggagcattcaacgtacacaatgacacttttacagataaacaaatcaatattacacattaatatt |
469 |
Q |
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| T |
8149423 |
tcatgggagcattcaacgtacacaatgacacttttacagataaacaaatcaatattacacattaatatt |
8149355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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