View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17632_high_5 (Length: 460)

Name: NF17632_high_5
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17632_high_5
NF17632_high_5
[»] chr3 (14 HSPs)
chr3 (14-152)||(23322172-23322310)
chr3 (220-444)||(23321881-23322104)
chr3 (108-152)||(21221370-21221414)
chr3 (108-152)||(50678829-50678873)
chr3 (108-152)||(54622806-54622850)
chr3 (108-152)||(1344717-1344761)
chr3 (221-309)||(3964161-3964249)
chr3 (108-152)||(19906793-19906837)
chr3 (108-152)||(21373961-21374005)
chr3 (108-152)||(25860431-25860475)
chr3 (108-152)||(28675821-28675865)
chr3 (108-152)||(29584906-29584950)
chr3 (108-152)||(38213385-38213429)
chr3 (108-152)||(39052848-39052892)
[»] chr8 (13 HSPs)
chr8 (221-313)||(35225530-35225622)
chr8 (233-306)||(25478122-25478195)
chr8 (221-306)||(17805564-17805649)
chr8 (108-152)||(6386606-6386650)
chr8 (108-150)||(37618423-37618465)
chr8 (107-152)||(14005074-14005119)
chr8 (108-152)||(7394845-7394889)
chr8 (108-152)||(8673086-8673130)
chr8 (108-152)||(10320308-10320352)
chr8 (108-152)||(10656717-10656761)
chr8 (108-152)||(29563257-29563301)
chr8 (108-152)||(32303616-32303660)
chr8 (108-152)||(37602973-37603017)
[»] chr5 (10 HSPs)
chr5 (221-306)||(32313713-32313798)
chr5 (108-152)||(553427-553471)
chr5 (108-148)||(700623-700663)
chr5 (108-152)||(7208252-7208296)
chr5 (222-306)||(8136713-8136797)
chr5 (108-152)||(24036260-24036304)
chr5 (108-152)||(31770613-31770657)
chr5 (108-152)||(32528745-32528789)
chr5 (108-152)||(39918537-39918581)
chr5 (108-152)||(41790484-41790528)
[»] chr1 (15 HSPs)
chr1 (222-315)||(39281769-39281862)
chr1 (225-291)||(570285-570351)
chr1 (112-148)||(34283911-34283947)
chr1 (113-152)||(41967945-41967984)
chr1 (232-306)||(26765006-26765080)
chr1 (221-306)||(1351640-1351725)
chr1 (221-306)||(17887830-17887915)
chr1 (108-152)||(1351526-1351570)
chr1 (108-152)||(6029392-6029436)
chr1 (108-152)||(13994166-13994210)
chr1 (108-152)||(16437401-16437445)
chr1 (108-152)||(31004171-31004215)
chr1 (221-313)||(42510401-42510493)
chr1 (108-152)||(45490966-45491010)
chr1 (108-152)||(50382494-50382538)
[»] chr7 (7 HSPs)
chr7 (108-152)||(32873786-32873830)
chr7 (108-152)||(35645481-35645525)
chr7 (108-152)||(43189259-43189303)
chr7 (108-145)||(17237117-17237154)
chr7 (108-152)||(1870169-1870213)
chr7 (228-308)||(21784747-21784827)
chr7 (108-152)||(21784905-21784949)
[»] chr6 (7 HSPs)
chr6 (108-152)||(3259713-3259757)
chr6 (108-152)||(10324166-10324210)
chr6 (108-152)||(11279158-11279202)
chr6 (108-152)||(11382094-11382138)
chr6 (108-152)||(166978-167022)
chr6 (108-148)||(7396180-7396220)
chr6 (108-152)||(15277335-15277379)
[»] chr4 (12 HSPs)
chr4 (108-152)||(7554966-7555010)
chr4 (108-152)||(49152109-49152153)
chr4 (113-152)||(12600919-12600958)
chr4 (106-152)||(50729549-50729595)
chr4 (221-306)||(21579903-21579988)
chr4 (108-152)||(21202772-21202816)
chr4 (108-152)||(23521913-23521957)
chr4 (108-152)||(24210352-24210396)
chr4 (108-152)||(38812553-38812597)
chr4 (108-152)||(50186561-50186605)
chr4 (108-152)||(55065342-55065386)
chr4 (108-152)||(55593918-55593962)
[»] chr2 (14 HSPs)
chr2 (230-306)||(3913599-3913675)
chr2 (221-313)||(5278965-5279057)
chr2 (108-152)||(12939316-12939360)
chr2 (108-152)||(44284659-44284703)
chr2 (113-152)||(16177904-16177943)
chr2 (371-409)||(29487510-29487548)
chr2 (108-152)||(7258927-7258971)
chr2 (108-152)||(7761589-7761633)
chr2 (108-152)||(9732946-9732990)
chr2 (108-152)||(10399886-10399930)
chr2 (369-409)||(13698857-13698897)
chr2 (108-152)||(28824573-28824617)
chr2 (369-409)||(40470800-40470840)
chr2 (108-152)||(40832485-40832529)
[»] scaffold0027 (1 HSPs)
scaffold0027 (113-152)||(15202-15241)
[»] scaffold0650 (1 HSPs)
scaffold0650 (108-152)||(1665-1709)
[»] scaffold0169 (2 HSPs)
scaffold0169 (108-152)||(12558-12602)
scaffold0169 (108-152)||(18076-18120)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 23322310 - 23322172
Alignment:
Q  14 gaacaaggaaactaattttgaaactacagtttctctatatttatgaataacagacccaaattctaatacattgttcctagaattcgagaagatatcacta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23322310 gaacaaggaaactaattttgaaactacagtttctctatatttatgaataacagacccaaattctaatacattgttcctagaattcgagaagatatcacta 23322211  T
Q  114 aaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23322210 aaccacaacacaactttttatctctcgtacaagttgtct 23322172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 220 - 444
Target Start/End: Complemental strand, 23322104 - 23321881
Alignment:
Q  220 gtttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatccttaatcttta 319  Q
    |||| ||||||||||||||||| |||||   ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  23322104 gtttatcttgtgttgttctgctctgtgt---gtagttctctcttatgctattttgtcaggtacttactgtttagcaaatcaaacacatcattaatcttta 23322008  T
Q  320 ctttcattctttaacaaatactgatatatgttc--nnnnnnnnnnnnaaagagcaaattttattaaaaaccagattcatgctcaagatgaactgatatat 417  Q
    | |||||||||||||||||||||||||||||||              ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23322007 cattcattctttaacaaatactgatatatgttcatttatttatttttaaacagcaaattttattaaaaaccagatccatgctcaagatgaactgatatat 23321908  T
Q  418 gttcatttgaaatcccatgttattctt 444  Q
    |||||||||||||||||||||||||||    
T  23321907 gttcatttgaaatcccatgttattctt 23321881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 21221370 - 21221414
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  21221370 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 21221414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 50678873 - 50678829
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  50678873 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 50678829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 54622806 - 54622850
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||    
T  54622806 tcacgaaaccacaacacaactttttatcccacgtacaagttgtct 54622850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 1344717 - 1344761
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  1344717 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 1344761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 3964249 - 3964161
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatcc 309  Q
    ||||||||||| ||||||||  ||| |||||| ||  | |||| |||| || | |||||||||||||||||  |||||||||| |||||    
T  3964249 tttgtcttgtgctgttctgccttgtattgtgttgtgttgtcttgtgctgttctatcaagtacttactgttttgcaaatcaaacgcatcc 3964161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 19906837 - 19906793
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  19906837 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 19906793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 21374005 - 21373961
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  21374005 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 21373961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 25860431 - 25860475
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  25860431 tcaccaaaccacatcacaactttttgtctcacgtacaagttgtct 25860475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 28675865 - 28675821
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  28675865 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 28675821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 29584950 - 29584906
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  29584950 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 29584906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 38213429 - 38213385
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  38213429 tcacgaaaccacaacacaactttttgtcccacgtacaagttgtct 38213385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 39052848 - 39052892
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  39052848 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 39052892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 35225622 - 35225530
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatccttaa 313  Q
    |||||||||||||||||||   |||||||||| || || |||| | ||||| |||| ||||||||||||||  |||| |||||||||||||||    
T  35225622 tttgtcttgtgttgttctgtcttgtgttgtgttgtcctgtcttgtactattctgtccagtacttactgttttgcaaaccaaacacatccttaa 35225530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 25478195 - 25478122
Alignment:
Q  233 tgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    ||||||||  |||||||| | ||||| |||||| || |||||||||||||||||||||| ||||| ||||||||    
T  25478195 tgttctgccttgtgttgtattgttctatcttatactgttttgtcaagtacttactgttttacaaaccaaacaca 25478122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 17805649 - 17805564
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||| ||||||||||| |  ||||||||||  |||| |||| | || ||||||||||||||||||||||  |||| ||||||||    
T  17805649 tttgtcctgtgttgttctaccttgtgttgtgttattctgtcttgtactgttttgtcaagtacttactgttttgcaaaccaaacaca 17805564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 6386650 - 6386606
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  6386650 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 6386606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 37618423 - 37618465
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgt 150  Q
    |||| |||||||||||||||||||| |||| ||||||||||||    
T  37618423 tcaccaaaccacaacacaactttttgtctcacgtacaagttgt 37618465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 14005074 - 14005119
Alignment:
Q  107 atcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    ||||| |||||||||||||||||||| || | ||||||||||||||    
T  14005074 atcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 14005119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 7394845 - 7394889
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||| ||||||||||||| |||| ||||||||||||||    
T  7394845 tcaccaaaccataacacaactttttgtctcacgtacaagttgtct 7394889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 8673086 - 8673130
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  8673086 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 8673130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10320308 - 10320352
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||| | | ||||||||||||||    
T  10320308 tcaccaaaccacaacacaactttttaccacacgtacaagttgtct 10320352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10656717 - 10656761
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||| ||||||    
T  10656717 tcacaaaaccacaacacaactttttgtctcacgtacaaattgtct 10656761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 29563257 - 29563301
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  29563257 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 29563301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 32303616 - 32303660
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  32303616 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 32303660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 37602973 - 37603017
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||| ||||||||||||||||||| | || |||||||||    
T  37602973 tcactaaaccgcaacacaactttttatctcacatataagttgtct 37603017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 32313798 - 32313713
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||| ||||||||||||   |||||| ||| ||||| |||||| || || ||||||||||||| |||||| |||||||||||||    
T  32313798 tttgtcatgtgttgttctgtcttgtgttatgttgttctgtcttatacttttatgtcaagtacttattgtttagcaaatcaaacaca 32313713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 553471 - 553427
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  553471 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 553427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 700623 - 700663
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagtt 148  Q
    |||| |||||||||||||||||||| |||| ||||||||||    
T  700623 tcaccaaaccacaacacaactttttgtctcacgtacaagtt 700663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 7208252 - 7208296
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  7208252 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 7208296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 8136797 - 8136713
Alignment:
Q  222 ttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    ||||| ||||||||| |||  ||||||||   ||||| |||| | ||||| |||| |||||||||||||| ||||| ||||||||    
T  8136797 ttgtcctgtgttgttatgccttgtgttgtactgttctatcttgtactattctgtccagtacttactgttttacaaaccaaacaca 8136713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 24036304 - 24036260
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||| | ||||||||||||||    
T  24036304 tcaccaaaccacatcacaactttttatcccacgtacaagttgtct 24036260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 31770613 - 31770657
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  31770613 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 31770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 32528789 - 32528745
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  32528789 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 32528745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 39918581 - 39918537
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  39918581 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 39918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 41790484 - 41790528
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||| ||||||    
T  41790484 tcaccaaaccacaacacaactttttgtctcacgtacaaattgtct 41790528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 39281862 - 39281769
Alignment:
Q  222 ttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatccttaatc 315  Q
    ||||| ||||||||| |||  |||||||||  ||||| |||||| ||||| |||| ||||||||||||||  |||| |||||||| ||||||||    
T  39281862 ttgtcatgtgttgttatgcattgtgttgtgctgttctatcttatactattctgtccagtacttactgttttgcaaaccaaacacacccttaatc 39281769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 570351 - 570285
Alignment:
Q  225 tcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgttt 291  Q
    ||||||||||||||||| | |||||||| ||||| |||| | |||||||||| | ||||||||||||    
T  570351 tcttgtgttgttctgctttatgttgtgttgttctatcttgtactattttgtctaatacttactgttt 570285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 34283911 - 34283947
Alignment:
Q  112 taaaccacaacacaactttttatctctcgtacaagtt 148  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34283911 taaaccacaacacaactttttatctcacgtacaagtt 34283947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 41967945 - 41967984
Alignment:
Q  113 aaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  41967945 aaaccacaacacaactttttgtctcacgtacaagttgtct 41967984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 26765006 - 26765080
Alignment:
Q  232 ttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||||||  |||||||||| ||||| |||| | || || |||| ||||||||||||||  |||||||||||||    
T  26765006 ttgttctgccttgtgttgtgttgttctatcttgtactgttctgtccagtacttactgttttgcaaatcaaacaca 26765080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 1351640 - 1351725
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||| |||||||||||||  ||||||||   ||||| |||| | || || |||||||||||||||||||  |||| ||||||||    
T  1351640 tttgtcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcaagtacttactgttttgcaaaccaaacaca 1351725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 17887915 - 17887830
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||| |||||||||||||  |||||||| | ||||| |||| | ||||| ||||  |||||||||||||  |||| ||||||||    
T  17887915 tttgtcatgtgttgttctgccttgtgttgtattgttctatcttgtactattctgtcccgtacttactgttttgcaaaccaaacaca 17887830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 1351526 - 1351570
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  1351526 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 1351570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 6029392 - 6029436
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  6029392 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 6029436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 13994166 - 13994210
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| ||||  |||||||||||||    
T  13994166 tcaccaaaccacaacacaactttttgtctcatgtacaagttgtct 13994210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 16437445 - 16437401
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  16437445 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 16437401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 31004215 - 31004171
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  31004215 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 31004171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 42510493 - 42510401
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatccttaa 313  Q
    |||||| |||| ||||||||  ||||||||   ||||| |||| | || || |||| ||||||||||||||  ||||||||||||| ||||||    
T  42510493 tttgtcctgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaatcaaacacacccttaa 42510401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 45490966 - 45491010
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  45490966 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 45491010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 50382494 - 50382538
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  50382494 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 50382538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 32873786 - 32873830
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  32873786 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 32873830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 35645525 - 35645481
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  35645525 tcactaaaccacaacacaactttttatcgtacgtacaagttgtct 35645481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 43189259 - 43189303
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||    
T  43189259 tcaccaaaccacaacacaactttttatcccacgtacaagttgtct 43189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 17237154 - 17237117
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaa 145  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  17237154 tcactaaaccacaacacaactttttgtctcacgtacaa 17237117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 1870213 - 1870169
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  1870213 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 1870169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 21784827 - 21784747
Alignment:
Q  228 tgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatc 308  Q
    |||||||||||||  ||||||||   ||||| |||| | || ||||||| ||||||||||||||  |||| ||||||||||    
T  21784827 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccagtacttactgttttgcaaaccaaacacatc 21784747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 21784949 - 21784905
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  21784949 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 21784905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 3259757 - 3259713
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||    
T  3259757 tcaccaaaccacaacacaactttttatcccacgtacaagttgtct 3259713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10324166 - 10324210
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  10324166 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 10324210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 11279202 - 11279158
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  11279202 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 11279158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 11382138 - 11382094
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  11382138 tcaccaaaccacaacacaactttttgtctcacgtacaagttgtct 11382094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 166978 - 167022
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  166978 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 167022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 7396180 - 7396220
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagtt 148  Q
    |||||||||||| |||||||||||| |||| ||||||||||    
T  7396180 tcactaaaccactacacaactttttgtctcacgtacaagtt 7396220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 15277335 - 15277379
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||| | ||||||||||||||    
T  15277335 tcaccaaaccacatcacaactttttatcccacgtacaagttgtct 15277379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 7554966 - 7555010
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||    
T  7554966 tcactaaaccataacacaactttttgtctcacgtacaagttgtct 7555010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 49152109 - 49152153
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||    
T  49152109 tcaccaaaccacaacacaactttttatcccacgtacaagttgtct 49152153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 12600958 - 12600919
Alignment:
Q  113 aaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  12600958 aaaccacaacacaactttttgtctcacgtacaagttgtct 12600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 50729549 - 50729595
Alignment:
Q  106 tatcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||| |||||||| ||||||||||| |||| ||||||||||||||    
T  50729549 tatcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 50729595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 21579988 - 21579903
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||| |||||||||||||  ||||||||   ||||| |||||| || || |||| ||||||||||||||  |||| ||||||||    
T  21579988 tttgtcctgtgttgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttactgttttgcaaaccaaacaca 21579903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 21202816 - 21202772
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  21202816 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 21202772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 23521957 - 23521913
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  23521957 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 23521913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 24210396 - 24210352
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||| | ||||||||||||||    
T  24210396 tcaccaaaccacagcacaactttttatcccacgtacaagttgtct 24210352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 38812597 - 38812553
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  38812597 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 38812553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 50186605 - 50186561
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| ||||||||||||||||||||||| | | ||||||||||||    
T  50186605 tcaccaaaccacaacacaactttttatcccacatacaagttgtct 50186561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 55065342 - 55065386
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  55065342 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 55065386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 55593962 - 55593918
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||| | ||||||||||||||    
T  55593962 tcaccaaaccacagcacaactttttatcccacgtacaagttgtct 55593918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 3913599 - 3913675
Alignment:
Q  230 tgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacaca 306  Q
    |||||||||||  |||||||||| ||||| |||||| || || | ||||||| |||||||||  |||||||||||||    
T  3913599 tgttgttctgccttgtgttgtgttgttctgtcttatactgttctatcaagtatttactgttttgcaaatcaaacaca 3913675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 5278965 - 5279057
Alignment:
Q  221 tttgtcttgtgttgttctgctatgtgttgtgtagttctctcttatgctattttgtcaagtacttactgtttaacaaatcaaacacatccttaa 313  Q
    |||||| |||| ||||||||  |||||||| | ||||| |||| | || || |||||||||||||||||||  |||| |||||||| ||||||    
T  5278965 tttgtcctgtgctgttctgccttgtgttgtattgttctatcttgtactgttctgtcaagtacttactgttttgcaaaccaaacacacccttaa 5279057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 12939316 - 12939360
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||    
T  12939316 tcaccaaaccacagcacaactttttatctcacgtacaagttgtct 12939360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 44284703 - 44284659
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||    
T  44284703 tcactaaaccacagcacaactttttgtctcacgtacaagttgtct 44284659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 16177904 - 16177943
Alignment:
Q  113 aaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  16177904 aaaccacaacacaactttttgtctcacgtacaagttgtct 16177943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 29487548 - 29487510
Alignment:
Q  371 caaattttattaaaaaccagattcatgctcaagatgaac 409  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  29487548 caaattttattaaaaaccagatccctgctcaagatgaac 29487510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 7258971 - 7258927
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  7258971 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 7258927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 7761589 - 7761633
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  7761589 tcaccaaaccacagcacaactttttgtctcacgtacaagttgtct 7761633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 9732946 - 9732990
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  9732946 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 9732990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10399886 - 10399930
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    ||||||||||||||||||||||||| ||||  ||| |||||||||    
T  10399886 tcactaaaccacaacacaactttttgtctcatgtataagttgtct 10399930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 13698857 - 13698897
Alignment:
Q  369 agcaaattttattaaaaaccagattcatgctcaagatgaac 409  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  13698857 agcaaattttattaaaaaccatatttatgctcaagacgaac 13698897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 28824573 - 28824617
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||| |||||||||||||||| ||| ||||||||||    
T  28824573 tcaccaaaccacatcacaactttttatctcacgtgcaagttgtct 28824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 40470840 - 40470800
Alignment:
Q  369 agcaaattttattaaaaaccagattcatgctcaagatgaac 409  Q
    |||||||||||||||||| ||||||| ||||||||| ||||    
T  40470840 agcaaattttattaaaaatcagattcttgctcaagacgaac 40470800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 40832485 - 40832529
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| |||| ||||||||| ||||    
T  40832485 tcaccaaaccacaacacaactttttgtctcacgtacaagtagtct 40832529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 15241 - 15202
Alignment:
Q  113 aaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  15241 aaaccacaacacaactttttgtctcacgtacaagttgtct 15202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 1665 - 1709
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  1665 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 1709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 12558 - 12602
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  12558 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 12602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 18076 - 18120
Alignment:
Q  108 tcactaaaccacaacacaactttttatctctcgtacaagttgtct 152  Q
    |||| |||||||||||||||||||| || | ||||||||||||||    
T  18076 tcaccaaaccacaacacaactttttgtcccacgtacaagttgtct 18120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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