View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_high_6 (Length: 447)
Name: NF17632_high_6
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 61 - 383
Target Start/End: Complemental strand, 47583350 - 47583024
Alignment:
| Q |
61 |
tgttggtgtaaaataaatacaagatgtgaaatcaacagtggtgtcaaaaacttaaaaagcaagaatatattaactccgtactaggaaattttggttcagg |
160 |
Q |
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| T |
47583350 |
tgttgatgtaaaataaatacaagatgtgaaatcaacagtggtgtcaaaaacttaaaaagcatgaatatat-aactccgtactaggaaaatttggttcagg |
47583252 |
T |
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| Q |
161 |
attcagttcatgttattgagttgaaagcttcatcatcgtgcatctatcatcacttacctatatctatctctgtctctctgcttcatgtcgtgtcacaatt |
260 |
Q |
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| T |
47583251 |
attcagttcatgttattgagttgaaagcttcatcatcgtgcatctatcatcacttacctatatctatctctgtctctctgcttcatgtcgtgtcacaatt |
47583152 |
T |
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| Q |
261 |
cacaaacctgttacattacatttcatgg-----gatactcaattggtttcgtgtgcccgtgttcaaaatttccactatttctctgaatcagtgctgtaaa |
355 |
Q |
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| T |
47583151 |
cacaaacctgttacattacatttcatgggatccgatactcaattggtttcgtgtgcccgtgttcaaaatttccactatttctctgaatcaatgctgtaaa |
47583052 |
T |
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| Q |
356 |
ctataattggaatagctagcaatacggc |
383 |
Q |
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| T |
47583051 |
ctataattggaatagctagcaatacggc |
47583024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47583377 - 47583347
Alignment:
| Q |
1 |
aacactgcatggcaactgacacgtacctgtt |
31 |
Q |
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| T |
47583377 |
aacactgcatggcaactgacacgtacctgtt |
47583347 |
T |
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