View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17632_high_8 (Length: 409)

Name: NF17632_high_8
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17632_high_8
NF17632_high_8
[»] chr4 (6 HSPs)
chr4 (4-398)||(41075630-41076028)
chr4 (146-209)||(42694703-42694766)
chr4 (148-215)||(41073182-41073249)
chr4 (305-384)||(42693854-42693932)
chr4 (98-139)||(41073303-41073344)
chr4 (260-297)||(42694492-42694529)
[»] scaffold0384 (1 HSPs)
scaffold0384 (4-66)||(3404-3465)
[»] scaffold0079 (1 HSPs)
scaffold0079 (4-66)||(5963-6024)
[»] chr7 (5 HSPs)
chr7 (262-324)||(45557435-45557497)
chr7 (264-324)||(40491650-40491710)
chr7 (262-324)||(25156270-25156332)
chr7 (260-324)||(17111913-17111977)
chr7 (261-321)||(40561714-40561774)
[»] chr8 (5 HSPs)
chr8 (261-324)||(32927961-32928024)
chr8 (260-305)||(9461510-9461555)
chr8 (261-324)||(26100099-26100162)
chr8 (272-305)||(5219199-5219232)
chr8 (264-312)||(7533869-7533917)
[»] chr3 (3 HSPs)
chr3 (260-324)||(31013086-31013150)
chr3 (147-193)||(39054247-39054293)
chr3 (260-324)||(31708192-31708256)
[»] chr5 (1 HSPs)
chr5 (98-136)||(29821955-29821993)
[»] chr2 (3 HSPs)
chr2 (261-323)||(16518847-16518909)
chr2 (260-316)||(680251-680307)
chr2 (264-316)||(1976825-1976877)
[»] chr1 (2 HSPs)
chr1 (261-299)||(30557571-30557609)
chr1 (260-324)||(34915134-34915198)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 398
Target Start/End: Original strand, 41075630 - 41076028
Alignment:
Q  4 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttggagatcaat 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |    
T  41075630 agttttgaatcatgtgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttgaattttt-t 41075728  T
Q  104 tttggggattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41075729 tttggagattaaaatcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtc 41075828  T
Q  204 tatgtatggtttcgg------gttcgtaaacaacaaacacacgttcatggccatcaaccgtgattcaactcacttttatatgaatgtatcaaaaaacaaa 297  Q
    ||||||||||||| |      |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  41075829 tatgtatggtttcagtttcaggttcgtaaacaacaaacacacgttcatggccatcaatcgtgatttagctcacttttatatgaatgtatcaaaaaacaaa 41075928  T
Q  298 tcgctttacctacaactcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaaacatacacaggtt 397  Q
     | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41075929 ccactttacctacaactcatttttag-ttagattaaattctacagaaccaatttacttcgaatcggtttttgtcaaatctcaaccaaacatacacaggtt 41076027  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 42694703 - 42694766
Alignment:
Q  146 cacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgta 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  42694703 cacttgaaaaacacttctaatgtatctaaacttaaaaccaaacaccctatacttagtcaatgta 42694766  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 41073249 - 41073182
Alignment:
Q  148 cttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggttt 215  Q
    ||||||||||||||||||||||||  |||||||||||||||||  || || ||| |||||| ||||||    
T  41073249 cttgaaaaacacttctaatgcatcctaacttaaaaccaaacacaataaacatagcctatgtttggttt 41073182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 42693932 - 42693854
Alignment:
Q  305 acctacaactcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaa 384  Q
    |||||||||||| |||||||| ||| |||||| |||| |  ||||||||| | |||||||| ||||| ||||||||||||    
T  42693932 acctacaactcaattttagtt-agaataaattttacagagtcaatttactccaaatcaattcttgtctaatctcaaccaa 42693854  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 41073303 - 41073344
Alignment:
Q  98 atcaattttggggattaaaatcaattctatttgaagctaata 139  Q
    ||||||||||| || ||||| |||||||||||||||||||||    
T  41073303 atcaattttggtgagtaaaaacaattctatttgaagctaata 41073344  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 42694529 - 42694492
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaa 297  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  42694529 attcaactcacttttacatgaatatatcaaaaaacaaa 42694492  T

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Target: scaffold0384 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 3465 - 3404
Alignment:
Q  4 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 66  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3465 agttttgaatcatgtgtgttggtgggttat-gttatgtgtaacttatgttgcctgaaaactgt 3404  T

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Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 6024 - 5963
Alignment:
Q  4 agttttgaatcatctgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 66  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||    
T  6024 agttttgaatcatgtgtgttggtgggttat-gttatgcgtaacttatgttgcctgaaaactgt 5963  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 45557435 - 45557497
Alignment:
Q  262 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||| |||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagt 45557497  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 40491650 - 40491710
Alignment:
Q  264 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||| |||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagt 40491710  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 25156270 - 25156332
Alignment:
Q  262 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||||||||||||||||||||||||  ||| |||||||  |||| || |||||||||||||||    
T  25156270 tcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagt 25156332  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 17111913 - 17111977
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||| ||||| ||||| ||||||| ||| ||| ||||||| |||||||||||| ||| |||||||    
T  17111913 attctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagt 17111977  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 40561774 - 40561714
Alignment:
Q  261 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcattttt 321  Q
    ||||||||||||||| ||||||||||| ||| | ||||| |||||| | ||||||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 32927961 - 32928024
Alignment:
Q  261 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    ||||||||||||||| ||||||||||| ||| ||||||| |||| ||| ||||||| |||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagt 32928024  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 9461555 - 9461510
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgcttta 305  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  9461555 attcaactcacttttatatgaatgtatccaaacacaaatcacttta 9461510  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 26100162 - 26100099
Alignment:
Q  261 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    ||||||||||||||| || |||| ||| ||| |||||| ||||||||| |||||| ||||||||    
T  26100162 ttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagt 26100099  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 5219199 - 5219232
Alignment:
Q  272 tttatatgaatgtatcaaaaaacaaatcgcttta 305  Q
    |||||||||||||||||||||||||||| |||||    
T  5219199 tttatatgaatgtatcaaaaaacaaatcacttta 5219232  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 7533869 - 7533917
Alignment:
Q  264 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaa 312  Q
    |||||||||||||||||||||| | ||| ||| ||| ||||||||||||    
T  7533869 aactcacttttatatgaatgtacccaaacacagatcactttacctacaa 7533917  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 31013086 - 31013150
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    ||||||||||||| || ||||||| ||| ||| ||||||| ||||| |||||||||| |||||||    
T  31013086 attcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagt 31013150  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 39054247 - 39054293
Alignment:
Q  147 acttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccct 193  Q
    |||||||||||||||||||  ||||||||| |||||||||| |||||    
T  39054247 acttgaaaaacacttctaagacatctaaacataaaaccaaaaaccct 39054293  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 31708256 - 31708192
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||| |  ||||||| |||||||    
T  31708256 attcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagt 31708192  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 29821955 - 29821993
Alignment:
Q  98 atcaattttggggattaaaatcaattctatttgaagcta 136  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  29821955 atcaattttggagattaaaaacaattctatttgaagcta 29821993  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 16518847 - 16518909
Alignment:
Q  261 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttag 323  Q
    ||||||||||||||| ||||||||||| ||| |||||||  ||||||  ||||||| ||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 680307 - 680251
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 316  Q
    |||||||||||||||| ||||||||||  ||| ||||| | |||||||| |||||||    
T  680307 attcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactca 680251  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 1976877 - 1976825
Alignment:
Q  264 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 316  Q
    |||||||||||| ||||||||||| ||| | || ||||||||||| |||||||    
T  1976877 aactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactca 1976825  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 30557571 - 30557609
Alignment:
Q  261 ttcaactcacttttatatgaatgtatcaaaaaacaaatc 299  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30557571 ttcaactcacttttatatgaatgtatccaaacacaaatc 30557609  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 34915134 - 34915198
Alignment:
Q  260 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 324  Q
    |||||||||||||||| ||||||||||  ||| | |||||  ||||||| ||||||| |||||||    
T  34915134 attcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagt 34915198  T

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