View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17632_low_1 (Length: 754)
Name: NF17632_low_1
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 651; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 16 - 740
Target Start/End: Complemental strand, 46873623 - 46872900
Alignment:
| Q |
16 |
caggaatgtggcccattatttcaaaactgaagcggcatttgttgtataaacaatataacaattgctcattcagaacttgctctgcctataaacaaggatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873623 |
caggaatgtggcccattatttcaaaactgaagcggcatttgttgtataaacaatataacaattgctcattcagaacttgctctgcctataaacaaggatg |
46873524 |
T |
|
| Q |
116 |
gaatcattttccattcaaaacttgctctgtcaaatcaaacatgaaacataatagacaacgcaaccacaaaatgacacacattcaaatcatttaattaatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873523 |
gaatcattttccattcaaaacttgctctgtcaaatcaaacatgaaacataatagacaacgcaaccacaaaatgacacacattcaaatcatttaattaatc |
46873424 |
T |
|
| Q |
216 |
gctgtaatttgcacatcatatcacataaaatgacattctacacagcatctagaaaattnnnnnnnnnnnntattttatatgattgaacaatataaaacag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46873423 |
gctgtaatttgcacatcatatcacataaaatgacattctacacagcatctagaaaattaaaaaaaaaca-tattttatatgattgaacaatataaaacag |
46873325 |
T |
|
| Q |
316 |
tagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873324 |
tagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcc |
46873225 |
T |
|
| Q |
416 |
cgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873224 |
cgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacat |
46873125 |
T |
|
| Q |
516 |
ttctccccattgcaatacttcttgcacagtttcatcttgtttatgannnnnnnatcttcgttgcacgaaccaactagcttctgcgaatttggaggtggtt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46873124 |
ttctccccattgcaatacttcttgcacagtttcatcttgtttatgatttttttatcttcgttgcacggaccaactagcttctgcgaatttggaggtggtt |
46873025 |
T |
|
| Q |
616 |
gccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtg |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46873024 |
gccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatatgaacttagtacaaatccgtgttttgtagaaaatgtg |
46872925 |
T |
|
| Q |
716 |
gtctgatctgtttgattgaggaagg |
740 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46872924 |
gtctgatctgtttgattgaggaagg |
46872900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 286 - 459
Target Start/End: Complemental strand, 46890766 - 46890593
Alignment:
| Q |
286 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
385 |
Q |
| |
|
|||||||||| ||| ||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46890766 |
tattttatataattaaacaaaataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaa |
46890667 |
T |
|
| Q |
386 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
459 |
Q |
| |
|
| |||| ||| ||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
46890666 |
gagacagttcattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 584 - 736
Target Start/End: Complemental strand, 46890348 - 46890196
Alignment:
| Q |
584 |
accaactagcttctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaac |
683 |
Q |
| |
|
|||||||| ||||||| ||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
46890348 |
accaactaacttctgccaatgtggtggtggttgccttaactcttcagctccatgagcaaagttgcaattttgtccgtttctacaagtaccaaatctgaac |
46890249 |
T |
|
| Q |
684 |
ttagtacaaatctgtgttttgtagaaaatgtggtctgatctgtttgattgagg |
736 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46890248 |
ttagtacaaattcgtgttttgtagaaaatgtggtctgatttgtttgattgagg |
46890196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 550
Target Start/End: Complemental strand, 46890502 - 46890412
Alignment:
| Q |
460 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacagtttcat |
550 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacagtttcat |
46890412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 624 - 736
Target Start/End: Complemental strand, 46863763 - 46863651
Alignment:
| Q |
624 |
tcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctgatc |
723 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | ||||||||||||| |||||| |||||||||||||| || | || ||||||||||||||| || || |
|
|
| T |
46863763 |
tcttcaaccccatgagcaaagttgcaatctttaccgtttctacaagtaccaaacctgaacttagtacagattcgagtcttgtagaaaatgtgggttgctc |
46863664 |
T |
|
| Q |
724 |
tgtttgattgagg |
736 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
46863663 |
tgtttgatggagg |
46863651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 688
Target Start/End: Complemental strand, 46898876 - 46898797
Alignment:
| Q |
609 |
ggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagt |
688 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
46898876 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttctacaagtaccaaacctgaacttagt |
46898797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 48232222 - 48232273
Alignment:
| Q |
82 |
cattcagaacttgctctgcctataaacaaggatgg-aatcattttccattca |
132 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48232222 |
cattcagaacctgctctgcctataaacaaggatggaaatcattttccattca |
48232273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 48237262 - 48237313
Alignment:
| Q |
82 |
cattcagaacttgctctgcctataaacaaggatgg-aatcattttccattca |
132 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48237262 |
cattcagaacctgctctgcctataaacaaggatggaaatcattttccattca |
48237313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University