View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_low_15 (Length: 313)
Name: NF17632_low_15
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2840921 - 2840637
Alignment:
| Q |
18 |
ataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
2840921 |
ataaaaatgagccacaaagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca--atatattctctgttctt |
2840828 |
T |
|
| Q |
118 |
acttggaatcacaaaaatgttatcttatttttgtatttataggtgggag--nnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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| T |
2840827 |
acttggaatcacaaaaatgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccg |
2840728 |
T |
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| Q |
216 |
agattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgcctttgctt |
306 |
Q |
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| T |
2840727 |
agattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctt |
2840637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2845608 - 2845324
Alignment:
| Q |
18 |
ataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
2845608 |
ataaaaatgagccacaaagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca--atatattctctgttctt |
2845515 |
T |
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| Q |
118 |
acttggaatcacaaaaatgttatcttatttttgtatttataggtgggag--nnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccg |
215 |
Q |
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| T |
2845514 |
acttggaatcacaaaaatgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccg |
2845415 |
T |
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| Q |
216 |
agattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgcctttgctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2845414 |
agattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctt |
2845324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 2832642 - 2832750
Alignment:
| Q |
199 |
taaaccgaacaactccgagatttt-cactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtg |
297 |
Q |
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|||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2832642 |
taaaccgatcaagtcctagatttttcactttgtctgctaactaaagtgtagatgtcgtgatatacctgcagtttttcttcatcttgttcaccaaacagtg |
2832741 |
T |
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| Q |
298 |
cctttgctt |
306 |
Q |
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|||| |||| |
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| T |
2832742 |
ccttggctt |
2832750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 2832486 - 2832553
Alignment:
| Q |
18 |
ataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgtt |
85 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2832486 |
ataaaaatgagccacgaagatttttcttccttggtggtaccacaaaggcaattaagggcatttttgtt |
2832553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 2832556 - 2832607
Alignment:
| Q |
111 |
tgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtg |
162 |
Q |
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||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
2832556 |
tgttcatacttggaatcacaaaactgtcatctgatttttgtatttataggtg |
2832607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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