View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_low_2 (Length: 541)
Name: NF17632_low_2
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 47234054 - 47234351
Alignment:
| Q |
13 |
aaaatcaatgaaacaataaagtaaattagtaccaccaaggaagaagcatcaacacaatatatatgcaaacaaacagttctttcttgttaagttagaaata |
112 |
Q |
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| T |
47234054 |
aaaatcaatgaaacaataaagtaaattagtaccaccaaggaagaagcatcaacacaatatatatacaaacaaacagttctttcttgttaagttagaaata |
47234153 |
T |
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| Q |
113 |
ctaggatgagctagtttcttcaacttagctttattcatcaatgctttgtacagagatagaaatgaaatgaaagcagctttaaaatcactgagcatagtat |
212 |
Q |
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| T |
47234154 |
ctaggatgagctagtttcttcaacttagctttattcatcaatgctttgtacagagatagaaatgaaatgaaagcagctttaaaatcactgagcatagtat |
47234253 |
T |
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| Q |
213 |
gacatgaatacaacaactaataatctgaattcaagtacataaaacctagcccaattgacagttgttggtatcaatgaagggcttagggatctacacca |
310 |
Q |
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| T |
47234254 |
gacatgaatacaacaactaataatctgaattcaagtacataaaacctagcccaattgacagttgttggtatgaatgaagagcttagggatctacacca |
47234351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 446 - 526
Target Start/End: Original strand, 47234489 - 47234569
Alignment:
| Q |
446 |
ctctcaactcgctaactaggtctagggggtgtttggctggatgaggacatgttgaaaagaaatcattaaacctagatatat |
526 |
Q |
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| T |
47234489 |
ctctcaactcgctaactaggtctagggggtgtttggctggatgaggacatgttgaaaagaaatcattaaacctagatatat |
47234569 |
T |
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