View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17632_low_25 (Length: 220)

Name: NF17632_low_25
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17632_low_25
NF17632_low_25
[»] chr6 (24 HSPs)
chr6 (10-203)||(4585498-4585691)
chr6 (59-203)||(4570884-4571027)
chr6 (31-199)||(4606972-4607139)
chr6 (104-203)||(4557081-4557180)
chr6 (143-203)||(4560501-4560561)
chr6 (145-203)||(4563708-4563766)
chr6 (148-203)||(4480693-4480748)
chr6 (154-203)||(3171747-3171796)
chr6 (120-203)||(4592206-4592286)
chr6 (145-203)||(4574305-4574363)
chr6 (154-203)||(4504474-4504523)
chr6 (143-203)||(4598166-4598226)
chr6 (148-203)||(4492955-4493010)
chr6 (148-203)||(4505857-4505912)
chr6 (147-201)||(4579431-4579485)
chr6 (154-203)||(4299817-4299866)
chr6 (164-203)||(4516337-4516376)
chr6 (148-203)||(4601789-4601844)
chr6 (148-203)||(4617022-4617077)
chr6 (154-200)||(4490435-4490481)
chr6 (154-199)||(4267247-4267292)
chr6 (154-199)||(4392107-4392152)
chr6 (167-199)||(4568072-4568104)
chr6 (143-203)||(4613795-4613855)
[»] chr8 (3 HSPs)
chr8 (59-203)||(16686344-16686486)
chr8 (143-200)||(20863923-20863980)
chr8 (148-203)||(1674226-1674281)
[»] chr7 (1 HSPs)
chr7 (154-203)||(3086426-3086475)
[»] scaffold0477 (1 HSPs)
scaffold0477 (154-201)||(4765-4812)
[»] chr5 (2 HSPs)
chr5 (148-203)||(28000176-28000231)
chr5 (154-199)||(24103005-24103050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (154-200)||(3799-3845)
[»] chr3 (1 HSPs)
chr3 (148-203)||(1281114-1281169)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 4585498 - 4585691
Alignment:
10 catcatcatgaactcttaatttattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4585498 catcatcatgaactcttaatttattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaata 4585597  T
110 taatactacattgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
4585598 taatactacattgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaac 4585691  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 4570884 - 4571027
Alignment:
59 tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaaat-tcacttataggtttgattttattta 157  Q
    ||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||  ||| ||||||||||||    
4570884 tacaatagcctcatcccttaaattcaatagcagaagatcaatggatcaatataatactacattgcattaaaaacgtcactta--ggtgtgattttattta 4570981  T
158 agcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
4570982 agcaaaacctccttaatcactttttccaagttcatgtatgaacaac 4571027  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 4607139 - 4606972
Alignment:
31 tattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataa-aa 129  Q
    |||||| ||||||||| ||| |||||| |||| || |||||||||||||||||| ||||| || ||||||||||||| |||||| |||||||||||| ||    
4607139 tattagtatcaatatacttgctatacactacattaacatcatcccttaaattcaataggaaaagatcaatggatcaacataataatacattgcataaaaa 4607040  T
130 aattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaa 199  Q
    || |||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
4607039 aagtcact--taggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaa 4606972  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 4557081 - 4557180
Alignment:
104 tcaatataatactacattgcataaaaaat--tcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaaca 201  Q
    ||||| |||||||| |||||||||||||   |||||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
4557081 tcaatgtaatactaaattgcataaaaaaaagtcactta--ggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaaca 4557178  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 4560501 - 4560561
Alignment:
143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
4560501 gtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaac 4560561  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 4563708 - 4563766
Alignment:
145 ttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaac 4563766  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4480693 - 4480748
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaac 4480748  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 3171747 - 3171796
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaac 3171796  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 4592206 - 4592286
Alignment:
120 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||    
4592206 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaac 4592286  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 4574305 - 4574363
Alignment:
145 ttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||  ||||||||||||    
4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaac 4574363  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 4504523 - 4504474
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||    
4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaac 4504474  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 4598166 - 4598226
Alignment:
143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||| | |||||| || ||||||||||||||||| || |||||||||||||||||||    
4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaac 4598226  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4492955 - 4493010
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||||    
4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaac 4493010  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4505857 - 4505912
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||    
4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaac 4505912  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 4579431 - 4579485
Alignment:
147 gattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaaca 201  Q
    |||||| ||| || || ||||||||||||||||| ||||||||||||||||||||    
4579431 gattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaaca 4579485  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 4299866 - 4299817
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||| |||||||||||| ||||| |||||||||||||| |||||||    
4299866 tttaagcagaacctccttaataactttgtccaagttcatgtacgaacaac 4299817  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 4516337 - 4516376
Alignment:
164 acctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||||||||||||||||||||||||||  ||||||||||    
4516337 acctccttaatcactttttccaagttcacatatgaacaac 4516376  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4601789 - 4601844
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| ||||||||||| ||||| |||| |||| ||||||||||||    
4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaac 4601844  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 4617022 - 4617077
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| || |||||||| ||||| | ||||||||||||||||||||    
4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaac 4617077  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4490481 - 4490435
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaac 200  Q
    ||||||||  || |||||||||||||| |||||||||||||||||||    
4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaac 4490435  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4267292 - 4267247
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaa 199  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||    
4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaa 4267247  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4392152 - 4392107
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaa 199  Q
    ||||||||| ||||||||||||| ||| |||||||||||| |||||    
4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaa 4392107  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 4568072 - 4568104
Alignment:
167 tccttaatcactttttccaagttcatgtatgaa 199  Q
    |||||||||||||| ||||||||||||||||||    
4568072 tccttaatcactttgtccaagttcatgtatgaa 4568104  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 4613855 - 4613795
Alignment:
143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||||| ||| ||||  ||||| || |||||||| ||||||||||| ||||||||||    
4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaac 4613795  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 16686486 - 16686344
Alignment:
59 tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaaat-tcacttataggtttgattttattta 157  Q
    ||||||||||| ||||||| |||||| | |||||| ||||||||||||||||| |||| ||||||||||||||  |||||||  ||||||||||| ||||    
16686486 tacaatagcat-atcccttgaattcaattggagaagatcaatggatcaatatactactgcattgcataaaaaaagtcactta--ggtttgattttgttta 16686390  T
158 agcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
16686389 agcaaaacctccataatcactttttccaagttcatgtatgaacaac 16686344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 20863980 - 20863923
Alignment:
143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaac 200  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||    
20863980 gtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaac 20863923  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 1674226 - 1674281
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||    
1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaac 1674281  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 3086426 - 3086475
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaac 3086475  T

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Target: scaffold0477 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 4812 - 4765
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaaca 201  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||    
4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca 4765  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 28000231 - 28000176
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||||    
28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaac 28000176  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 24103005 - 24103050
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaa 199  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||    
24103005 tttaagcatgacctccttaataactttgtccaagttcatgtatgaa 24103050  T

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Target: scaffold0288 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 3845 - 3799
Alignment:
154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaac 200  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||||||    
3845 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaac 3799  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 1281114 - 1281169
Alignment:
148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaac 203  Q
    ||||| ||||||||| |  |||||||||||||| || |||||||||||||||||||    
1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaac 1281169  T

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