View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_low_3 (Length: 489)
Name: NF17632_low_3
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 42112996 - 42112548
Alignment:
| Q |
21 |
attagtccatatgttacaataaatcagaaactaaatttaaatctttgtaaaaatgtagagaataatttgagtattattttttatcaagtggcaaattaat |
120 |
Q |
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| T |
42112996 |
attagtccatctgttacaataaatcaaaaactaaatttaaaccgttataaaaatgtagaaaataatttta--agtattttttatatagtcgcagattaat |
42112899 |
T |
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| Q |
121 |
tgtgaagaaccaacaacaataaaacaaacgaggaaacaaacctgtctttgttcttttcctnnnnnnngaaaagaaacatgtctttgttttgttctagtct |
220 |
Q |
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| T |
42112898 |
tgtgaaggaccaacaacaataaaacaaacgaggaaacaaacctgtctttgttcttttcctaat-----aaaagaaacatgtctttgttttattctagttt |
42112804 |
T |
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| Q |
221 |
tactatagaaggttattttcaaatttcaatcaaagttgttcctttcttgtatttaagggtaactctaaattcttccacttctctcaccagatcttcttct |
320 |
Q |
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| T |
42112803 |
tactatagaaggttattttcaaatttcaatcaacgttgttcctttgttgtatttaagggtaactctaaattctcccacttctctcaccagatcttcttct |
42112704 |
T |
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| Q |
321 |
aaacatattaatattagtccaaacccatttgtgaattttttgtcattaattgtgttatgtgtctctttggtatcaaactttgtgtctgtgactatgaaca |
420 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42112703 |
aaacatattaatattagtccaaacccatttgtgatttttttgtcattaat--tgttatgtgtctctttggtatcaaac-ttgtgtctgtgactatgaaca |
42112607 |
T |
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| Q |
421 |
tgttttcagtttctcactcaaaggtggtgaagttgaaaatttattagtgttttcctatg |
479 |
Q |
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| T |
42112606 |
tgttttcagtttctcactgaaaggtggtgaagttgaaaatttagtagtattttcctatg |
42112548 |
T |
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