View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17632_low_4 (Length: 486)
Name: NF17632_low_4
Description: NF17632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17632_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 27782876 - 27783093
Alignment:
| Q |
1 |
tgaaagagaaagaagggtatttgggtttttgaaggcagctatgatgaacatgattggtttttggtttatgatcggaaaaggacattttcttcttcatgaa |
100 |
Q |
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| T |
27782876 |
tgaaagagaaagaagggtatttgggtttttgaagggagctatgatgaacatgattggtttttggtttatgatcggaaaagcacattttcttcttcatgaa |
27782975 |
T |
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| Q |
101 |
ggaagagagcgtagcagtaataagggtttggattgaatttgcgatgaacagggagagtagcaatatgagagcttagcatttctacttatatagacattgc |
200 |
Q |
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| T |
27782976 |
ggaagagagcgtagcagtaataagggtttggattgaatttgcgatgaacagggagagtagcaatatgagagcttagcatttctacttatatagacattgc |
27783075 |
T |
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| Q |
201 |
catgtcatcgatccgtga |
218 |
Q |
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| T |
27783076 |
catgtcatcgatccgtga |
27783093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27777085 - 27776868
Alignment:
| Q |
1 |
tgaaagagaaagaagggtatttgggtttttgaaggcagctatgatgaacatgattggtttttggtttatgatcggaaaaggacattttcttcttcatgaa |
100 |
Q |
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| T |
27777085 |
tgaaagagaaagaagggtatttgggtttttgaagtgagctatgatgaacatgattggtttttggtttatgatcggaaaaggacattttcttcttcatgaa |
27776986 |
T |
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| Q |
101 |
ggaagagagcgtagcagtaataagggtttgga-ttgaatttgcgatgaacagggagagtagcaatatgagagcttagcatttctacttatatagacattg |
199 |
Q |
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| T |
27776985 |
ggaagagagcgtagcagtaataagcgtttggatttgaatttccgatgaatagagatagtgagaatatgagagagtagcatttctgcttatatatccattg |
27776886 |
T |
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| Q |
200 |
ccatgtcatcgatccgtg |
217 |
Q |
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| T |
27776885 |
ccacctcatcgatccgtg |
27776868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 410
Target Start/End: Original strand, 27783159 - 27783298
Alignment:
| Q |
276 |
caacgacatctaatgatgccacctcatcaattcatttaccatta----attaactacgggaaggataacagaataatacactatagtgacaaaattaccc |
371 |
Q |
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| T |
27783159 |
caacgacatctaatgatgccacctcatcaatccatttaccattaattaattaactaggggagggatgacagaataatacactatagtgacaaaattaccc |
27783258 |
T |
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| Q |
372 |
acaannnnnnngttaaaattct-aattatccttgttgaaa |
410 |
Q |
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| T |
27783259 |
acaatttttttgttaaaattctaaattatccttgttgaaa |
27783298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27780499 - 27780438
Alignment:
| Q |
1 |
tgaaagagaaagaagggtatttgggtttttgaaggcagctatgatgaacatgattggttttt |
62 |
Q |
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| T |
27780499 |
tgaaagagaaagaagtgtatttggggttttgaagggagctatgatcaacatgattggttttt |
27780438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 27776809 - 27776758
Alignment:
| Q |
276 |
caacgacatctaatgatgccacctcatcaattcatttaccattaattaacta |
327 |
Q |
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| T |
27776809 |
caacgacatctaataatgccatctcatcaatccatttaccactaattaacta |
27776758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 27776684 - 27776617
Alignment:
| Q |
344 |
ataatacactatagtgacaaaattacccacaannnnnnngttaaaattct-aattatccttgttgaaa |
410 |
Q |
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| T |
27776684 |
ataatacactatagtgacaaaattacccacaattttttagttaaaattttaaattatccttgttgaaa |
27776617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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