View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17633_high_10 (Length: 385)

Name: NF17633_high_10
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17633_high_10
NF17633_high_10
[»] chr4 (4 HSPs)
chr4 (22-316)||(23757483-23757783)
chr4 (22-314)||(5432946-5433232)
chr4 (161-250)||(48500875-48500966)
chr4 (121-192)||(17522222-17522289)
[»] chr7 (2 HSPs)
chr7 (122-236)||(19218622-19218733)
chr7 (204-236)||(40918050-40918082)
[»] chr1 (2 HSPs)
chr1 (161-250)||(40187966-40188057)
chr1 (161-250)||(50483950-50484041)
[»] chr5 (1 HSPs)
chr5 (161-253)||(39349921-39350015)
[»] chr8 (2 HSPs)
chr8 (161-226)||(41637340-41637406)
chr8 (199-249)||(12819811-12819862)
[»] chr6 (3 HSPs)
chr6 (197-250)||(23638777-23638831)
chr6 (199-253)||(1756604-1756659)
chr6 (204-236)||(18498340-18498372)
[»] scaffold0041 (1 HSPs)
scaffold0041 (204-236)||(55013-55045)
[»] chr2 (2 HSPs)
chr2 (118-160)||(40542642-40542684)
chr2 (22-55)||(7962005-7962038)
[»] chr3 (1 HSPs)
chr3 (161-221)||(54353416-54353477)
[»] scaffold0081 (1 HSPs)
scaffold0081 (120-160)||(42737-42777)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 23757483 - 23757783
Alignment:
Q  22 aggagtggtgtagtttggggagaggatggtggagcagccgcggagggtgtggcggagatgtggaacagcggtggagacatgacgtcattgatgaggattg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  23757483 aggagtggtgtagtttggggagaggatggtggagcagccgcggagggtgtggcggagatgtggaacatcggcggagacatgacgtcattgatgaggattg 23757582  T
Q  122 aaggtgaaaaaatgggttttagttttcaattgagtttgttttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  23757583 aaggtgaaaaaatgggttttagttttcaattgagtttgttttgtggttgaagatgaactagatttatggtttaaagtgatgactttgataaatgagtgtt 23757682  T
Q  221 agttttgattatgagtagatgatggtggtgatggtgttaattagataaggtttgaatatgttgtttttga-----ttgaaatgatgaattttttaaagaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||    
T  23757683 agttttgattatgagtagatgatggtggtgatggtgttaattagataaggtttgattatgttgtttttgattaagttgaaatgatgaattttttaaagaa 23757782  T
Q  316 g 316  Q
    |    
T  23757783 g 23757783  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 5432946 - 5433232
Alignment:
Q  22 aggagtggtgtagtttggggagaggatggtggagcagccgcggagggtgtggcggagatgtggaacagcggtggagacatgacgtcattgatgaggattg 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||            ||||||||||||| || |||||| ||| |||||||||||||||||    
T  5432946 aggagtggtgtagtttggggagaggatggtggggcagccgcgg------------agatgtggaacagtggcggagacgtgatgtcattgatgaggattg 5433033  T
Q  122 aaggtgaaaaaatgggttttagttttcaattgagtttgttttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgtt 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  5433034 aaggtgaaaaaatgggttttagttttcaattgagtttggtttgtggttgaagatgaactaaatttatggtttaaagtgatgactttgataaatgagtgtt 5433133  T
Q  221 agttttgattatgagtagatgatggtggtgatggtgttaattagataaggtttgaatatgttgtttttga-----ttgaaatgatgaattttttaaaga 314  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||||| |||||    
T  5433134 agttttgattctaaatagatgatggtggtgatggtgttaattagataaggtttgattatgttgtttttgattaagttgaaatgatgaatttttgaaaga 5433232  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 48500875 - 48500966
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaa-atgatgactttgataaatgagtgttagttttgattatgag-tagatgatggtggtg 250  Q
    |||||||||||||||||||| ||||| ||||| || ||||||| ||||||||||| |||||| |||||||| |||| || ||||||||||||    
T  48500875 tttgtggttgaagatgaattggatttgtggttgaagatgatgaatttgataaatgggtgttaattttgattgtgagctatatgatggtggtg 48500966  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 17522222 - 17522289
Alignment:
Q  121 gaaggtga-aaaaatgggttttagttttcaattgagtttgttttgtggttgaagatgaattagatttatggtt 192  Q
    |||||||| |||||||||| |||||||| |||||||||||     |||||||||||||| |||||||||||||    
T  17522222 gaaggtgagaaaaatgggtgttagttttgaattgagtttg-----tggttgaagatgaactagatttatggtt 17522289  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 19218622 - 19218733
Alignment:
Q  122 aaggtgaaaaaatgggttttagttttcaattgagtttgttttgtggttgaagatgaatta-gatttatggtttaaa-tgatgactttgataaatgagtgt 219  Q
    ||||||||||||||||| |||||||| ||||||||||||     || |||||||||| |  ||||||||||| ||  |||||| |||||||||||  |||    
T  19218622 aaggtgaaaaaatgggtgttagttttgaattgagtttgt-----ggatgaagatgaaatctgatttatggttaaaggtgatgaatttgataaatggatgt 19218716  T
Q  220 tagttttgattatgagt 236  Q
    |||||||||||||||||    
T  19218717 tagttttgattatgagt 19218733  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 40918050 - 40918082
Alignment:
Q  204 tttgataaatgagtgttagttttgattatgagt 236  Q
    |||||||||||||||||||||||||||||||||    
T  40918050 tttgataaatgagtgttagttttgattatgagt 40918082  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 40188057 - 40187966
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgttagttttgattatgag-tagatgatggtggtg 250  Q
    ||||| |||||||||||||| ||||| ||||| ||  |||||| |||||||||||||||||| |||||||| |||| || ||||||||||||    
T  40188057 tttgtcgttgaagatgaattggatttgtggttgaaggtgatgaatttgataaatgagtgttaattttgattgtgagttatatgatggtggtg 40187966  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 50484041 - 50483950
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgttagttttgattatgag-tagatgatggtggtg 250  Q
    ||||||||||||||||| || ||||| ||||| ||  |||||| |||||||||||||||| | |||||||| |||| || ||||||||||||    
T  50484041 tttgtggttgaagatgatttggatttgtggttgaaggtgatgaatttgataaatgagtgtgaattttgattgtgagttatatgatggtggtg 50483950  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 39350015 - 39349921
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgttagttttgattatgag-tagatgatggtggtgatg 253  Q
    ||||| ||||||||||||||  |||| ||||| ||  |||||| |||||||||||||||||| |||||||| |||| || |||||||||||||||    
T  39350015 tttgtagttgaagatgaattgaatttgtggttgaaggtgatgaatttgataaatgagtgttaattttgattgtgagttatatgatggtggtgatg 39349921  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 41637406 - 41637340
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaa-atgatgactttgataaatgagtgttagtttt 226  Q
    |||||||||||||||||||| ||||| ||||| ||  |||||| |||||||||||||||||| ||||    
T  41637406 tttgtggttgaagatgaattggatttgtggttgaaggtgatgaatttgataaatgagtgttaatttt 41637340  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 12819811 - 12819862
Alignment:
Q  199 atgactttgataaatgagtgttagttttgattatgagt-agatgatggtggt 249  Q
    |||| ||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  12819811 atgaatttgataaatgggtgttagttttgattgtgagtaagatgatggtggt 12819862  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 23638831 - 23638777
Alignment:
Q  197 tgatgactttgataaatgagtgttagttttgattatg-agtagatgatggtggtg 250  Q
    |||||| ||||| |||||||||||||||||||||||| | |||||||||||||||    
T  23638831 tgatgaatttgacaaatgagtgttagttttgattatgaattagatgatggtggtg 23638777  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 1756659 - 1756604
Alignment:
Q  199 atgactttgataaatgagtgttagttttgattatgag-tagatgatggtggtgatg 253  Q
    |||| ||| ||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  1756659 atgaatttaataaatgggtgttagttttgattgtgagttagatgatggtggtgatg 1756604  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 18498372 - 18498340
Alignment:
Q  204 tttgataaatgagtgttagttttgattatgagt 236  Q
    ||||||||||| |||||||||||||||||||||    
T  18498372 tttgataaatgggtgttagttttgattatgagt 18498340  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 55045 - 55013
Alignment:
Q  204 tttgataaatgagtgttagttttgattatgagt 236  Q
    |||||||||||||||||||||||||||||||||    
T  55045 tttgataaatgagtgttagttttgattatgagt 55013  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 40542684 - 40542642
Alignment:
Q  118 attgaaggtgaaaaaatgggttttagttttcaattgagtttgt 160  Q
    |||||||||||||||| |||| |||||||| ||||||||||||    
T  40542684 attgaaggtgaaaaaaagggtgttagttttgaattgagtttgt 40542642  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 7962005 - 7962038
Alignment:
Q  22 aggagtggtgtagtttggggagaggatggtggag 55  Q
    |||||||||| |||||||||||||||||||||||    
T  7962005 aggagtggtggagtttggggagaggatggtggag 7962038  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 54353477 - 54353416
Alignment:
Q  161 tttgtggttgaagatgaattagatttatggtttaaa-tgatgactttgataaatgagtgtta 221  Q
    ||||| |||||||||||||| ||||| ||||| ||  |||||| ||||||||||||||||||    
T  54353477 tttgtcgttgaagatgaattggatttgtggttgaaggtgatgaatttgataaatgagtgtta 54353416  T

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Target: scaffold0081 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 42737 - 42777
Alignment:
Q  120 tgaaggtgaaaaaatgggttttagttttcaattgagtttgt 160  Q
    ||||||||||||||||||| ||| |||| ||||||||||||    
T  42737 tgaaggtgaaaaaatgggtgttacttttgaattgagtttgt 42777  T

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