View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17633_high_14 (Length: 323)
Name: NF17633_high_14
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 35095736 - 35095881
Alignment:
| Q |
20 |
aatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35095736 |
aatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaaga |
35095835 |
T |
|
| Q |
120 |
aagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35095836 |
aagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
35095881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 35095932 - 35096027
Alignment:
| Q |
216 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatt |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatt |
35096027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University