View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_high_3 (Length: 563)
Name: NF17633_high_3
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Complemental strand, 28292943 - 28292418
Alignment:
| Q |
18 |
aaacttagcacgacgaagagcctcttgagcatgatcagcattcccactcttacatctaacagacaacagcacctgaccaatactaaccctagcacaagtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28292943 |
aaacttagcacgacgaagagcctcttgagcatgatcaccattcccactcttacatctaacagacaacagcacctgaccaatactaaccctagcacaagtc |
28292844 |
T |
|
| Q |
118 |
cctaacggtttcccaaacgcacctctcatccccgtctgcaacctatctgccccagcacacgagagcatcttattaatcctcaacacatggaaaggatgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28292843 |
cctaacggtttcccaaacgcacctctcatccccgtctgcaacctatccgccccagcacacgagagcatcttattaatcctcaacacatggaaaggatgaa |
28292744 |
T |
|
| Q |
218 |
ccctcacacgcaaatgaaacgtgtcttttcccgcaaattttgacatgtacttgttgcacgcgattctagctgcctctaatgcttcactagagacattctc |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28292743 |
ccctcacacgcaaatgaaacgtgtcttttccagcaaattttgacatgtacttgttgcacgcgattctagctgcctctaatgcttcgctagagacattctc |
28292644 |
T |
|
| Q |
318 |
tttctcccacgatactaagtggacgcaaaatgggaactcatctacgccttttttcttcgcacctacatcatagattcggatctttggatctggtacaccg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28292643 |
tttctcccacgatactaagtggacgcaaaatgggaactcatctacgccttttttcttcgcacctacatcatagattcggatctttggatctggtacaccg |
28292544 |
T |
|
| Q |
418 |
cgacagaatcgtgacttagggtatggtttgttcttaatttgccggtaacatctcgctggtcctgacaaatatcaaaatgtttatactaccgttagaataa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28292543 |
cgacagaatcgtgacttagggtatggtttgttcttaatttgccggtaacatctcgctggtcctgacaaatatcaaaatgtttatactaccgttagaataa |
28292444 |
T |
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| Q |
518 |
ttagagttgtgctatttaaacataaa |
543 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
28292443 |
ttagagttgtgctatttaaacataaa |
28292418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 480
Target Start/End: Complemental strand, 43070168 - 43069818
Alignment:
| Q |
130 |
ccaaacgcacctctcatccccgtctgcaacctatctgccccagcacacgagagcatcttattaatcctcaacacatggaaaggatgaaccctcacacgca |
229 |
Q |
| |
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||||| || |||||||| || ||||| | |||||| || || ||||| || |||||||| || ||||| | |||||||| ||||||||||| || | || |
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| T |
43070168 |
ccaaaagcccctctcataccagtctgaagcctatcagctcccgcacatgaaagcatcttgttgatcctaagaacatggaatggatgaaccctaactctca |
43070069 |
T |
|
| Q |
230 |
aatgaaacgtgtcttttcccgcaaattttgacatgtacttgttgcacgcgattctagctgcctctaatgcttcactagagacattctctttctcccacga |
329 |
Q |
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| T |
43070068 |
agtggaatgcatcctttcctgcaaactttgacatgtatttgttgcaggcaatcctagcagcttcaagtgcctcactggacacattttccttctcccaact |
43069969 |
T |
|
| Q |
330 |
tactaagtggacgcaaaatgggaactcatctacgccttttttcttcgcacctacatcatagattcggatctttggatctggtacaccgcgacagaatcgt |
429 |
Q |
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|| | || || || || || |||||||| || ||||| |||||| || ||||| || || | |||||| ||||| || ||||| |||||||| || |
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| T |
43069968 |
gaccagatgaacacagaaaggaaactcatcaacacctttcttcttcatgccaacatcgtaaatcctgatcttgggatcaggaacaccacgacagaaacgg |
43069869 |
T |
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| Q |
430 |
gacttagggtatggtttgttcttaatttgccggtaacatctcgctggtcct |
480 |
Q |
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||||| || ||||| |||||||||||||| |||||||| || || |||||| |
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| T |
43069868 |
gactttggatatggcttgttcttaatttgacggtaacaccttgcaggtcct |
43069818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 480
Target Start/End: Original strand, 39035258 - 39035578
Alignment:
| Q |
160 |
ctatctgccccagcacacgagagcatcttattaatcctcaacacatggaaaggatgaaccctcacacgcaaatgaaacgtgtcttttcccgcaaattttg |
259 |
Q |
| |
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||||| || |||||||| || |||||||| || ||||| | |||||||| ||||||||||| || | ||| || || | || ||||| ||||| || | |
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| T |
39035258 |
ctatcagcaccagcacatgaaagcatcttgttgatcctgagtacatggaatggatgaaccctgactctcaagtggaatgcatcctttcctgcaaacttag |
39035357 |
T |
|
| Q |
260 |
acatgtacttgttgcacgcgattctagctgcctctaatgcttcactagagacattctctttctcccacgatactaagtggacgcaaaatgggaactcatc |
359 |
Q |
| |
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|||||||||||||||| || || |||||||| || | ||| ||||| |||||||| || |||||||| || | || || || || || |||||||| |
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| T |
39035358 |
acatgtacttgttgcaggcaatcctagctgcttcaagtgcctcacttgagacattttccttctcccaactgaccagatgaacacagaaaggaaactcatc |
39035457 |
T |
|
| Q |
360 |
tacgccttttttcttcgcacctacatcatagattcggatctttggatctggtacaccgcgacagaatcgtgacttagggtatggtttgttcttaatttgc |
459 |
Q |
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|| || || |||||| || |||||||| || | |||||| ||||| || || || |||||||||||||| || || ||||| |||||||||||||| |
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| T |
39035458 |
aacacccttcttcttcatgccaacatcataaatcctgatcttcggatcaggaactccacgacagaatcgtgattttggatatggcttgttcttaatttga |
39035557 |
T |
|
| Q |
460 |
cggtaacatctcgctggtcct |
480 |
Q |
| |
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|||||||| || || |||||| |
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| T |
39035558 |
cggtaacacctagcaggtcct |
39035578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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