View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17633_high_7 (Length: 463)
Name: NF17633_high_7
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_high_7 |
 | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0154 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 23834 - 24269
Alignment:
| Q |
16 |
cagaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaa |
115 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23834 |
cagaatcattcacactagaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaa |
23933 |
T |
|
| Q |
116 |
aagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23934 |
aagcatctcagccgtccatctctttcttcgatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgat |
24033 |
T |
|
| Q |
216 |
tcttctccggcaccaatccgaagcaacaacgaccacatatttgaatctttctccaaattccatgctggttttcccgttaccatctccaccactgcacacc |
315 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24034 |
tcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagttaccatctccaccactgcacacc |
24133 |
T |
|
| Q |
316 |
caagtgcccaaatatccgccggagattcatgctcgccattgtttactgattcgggtggcataaaaagtggggttcctctgcattcaaaactctgtttttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24134 |
caagtgcccaaatatccgccggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcctctgcattcaaaactctgtttttc |
24233 |
T |
|
| Q |
416 |
ccctgttttcttggcaagaccaaaatcagcaatttt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24234 |
ccctgttttcttggcaagaccaaaatcagcaatttt |
24269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 33 - 451
Target Start/End: Original strand, 14431 - 14849
Alignment:
| Q |
33 |
gaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtcc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14431 |
gaaacccaatcattgaaatcaaagtgatttcttggcgacgattcattaacattaatcacttcttcaacaaaaggatgattcaaaagcatctcagccgtcc |
14530 |
T |
|
| Q |
133 |
atctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaat |
232 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14531 |
atctttttcttggatctttcacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaat |
14630 |
T |
|
| Q |
233 |
ccgaagcaacaacgaccacatatttgaatctttctccaaattccatgctggttttcccgttaccatctccaccactgcacacccaagtgcccaaatatcc |
332 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14631 |
ctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatcc |
14730 |
T |
|
| Q |
333 |
gccggagattcatgctcgccattgtttactgattcgggtggcataaaaagtggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaa |
432 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14731 |
gcgggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaa |
14830 |
T |
|
| Q |
433 |
gaccaaaatcagcaatttt |
451 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14831 |
gaccaaaatcagcaatttt |
14849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 920 - 487
Alignment:
| Q |
18 |
gaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggtgacgactcatcaacattcttcacttcttcaacaaaaggatgattcaaaa |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
920 |
gaatcagtcgcactagaaacccaatcattgaaatcaaagtgatttcttggtgatgattcattaacattcttcacttcttcaacaaaaggatgattcaaaa |
821 |
T |
|
| Q |
118 |
gcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacggcgattc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
820 |
gcatctcagccgtccatctttttcttggatctttcacaaaacacttctcaacaaaatcttttccttcttttgacaattcttcgggtatcaccggcgattc |
721 |
T |
|
| Q |
218 |
ttctccggcaccaatccgaagcaacaacgaccacatatttgaatctttctccaaattccatgctggttttcccgttaccatctccaccactgcacaccca |
317 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
720 |
ttctccggtaccaatccgaagcaacaatgaccacatatttgaatctttctccaaattccatgctggttttccagttaccatctccaccaccgcacaccca |
621 |
T |
|
| Q |
318 |
agtgcccaaatatccgccggagattcatgctcgccattgtttactgattcgggtggcataaaaagtggggttcctctgcattcaaaactctgtttttccc |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | |||||||||||| || | |||||||||||| ||||| ||||||| |||||||||||| ||| |
|
|
| T |
620 |
agtgcccatatatccgccggagattcatgctcaccgtggtttactgattccggcgacataaaaagtggagttcccctgcatttcaaactctgttttcccc |
521 |
T |
|
| Q |
418 |
ctgttttcttggcaagaccaaaatcagcaatttt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
520 |
ctgttttcttggcaagaccaaaatcagcaatttt |
487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 6221768 - 6221917
Alignment:
| Q |
111 |
ttcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||| || | |||||||| || | |||||||||||| ||| |||||||| || || ||||||| |
|
|
| T |
6221768 |
ttcaaaagcatctctgccgtccatctttttgaaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacg |
6221867 |
T |
|
| Q |
211 |
gcgattcttctccggcaccaatccgaagcaacaacgaccacatatttgaa |
260 |
Q |
| |
|
| ||||| ||| | || ||||| |||| ||||||||||||||||||||| |
|
|
| T |
6221868 |
gtgattcgtcttctgccccaattcgaattaacaacgaccacatatttgaa |
6221917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University