View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_1 (Length: 715)
Name: NF17633_low_1
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 161 - 569
Target Start/End: Complemental strand, 3939071 - 3938686
Alignment:
| Q |
161 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
260 |
Q |
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| T |
3939071 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
3938972 |
T |
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| Q |
261 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaaggtaaggtaagattatcaattcctcgttttacagcaacagaaatgaa |
360 |
Q |
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| T |
3938971 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaagg-----taagattatcaattcctcgttttacagcaacagaaatgaa |
3938877 |
T |
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| Q |
361 |
tcgattgatatcatatggatcacatatttgaatgaagccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtag |
460 |
Q |
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| T |
3938876 |
tcgattgatatcatatggatcacatctttgaa------------------ggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtag |
3938795 |
T |
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| Q |
461 |
acaaaatgtcgaaaagctaagaagtttggagagccttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgc |
560 |
Q |
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| T |
3938794 |
acaaaatgtcgaaaagctaagaagtttggagagccttggtcgtcaaaatcaagagtgagaactgagagccatagttggttccatttcttggagaggatgc |
3938695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 582 - 698
Target Start/End: Complemental strand, 3938643 - 3938529
Alignment:
| Q |
582 |
cggagtctggcaatgtgctgattat---gtccatattcggagtaggggaggacatttcaagtgagaaagagaatcaaataatgtatttgtgataatcaca |
678 |
Q |
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| T |
3938643 |
cggagtctggcaatgtgctgattattatgtccacattcggagtaggggaggacatttcaagtgagaaagagaatcaaataatgtatttgtgataa----- |
3938549 |
T |
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| Q |
679 |
tcactgccacaactatatat |
698 |
Q |
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| T |
3938548 |
tcactgccacaactatatat |
3938529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 3939407 - 3939321
Alignment:
| Q |
14 |
agacaaacattagaatttaaagtgaagtttgacaattattgtaaatttagctagtgagaagtgacactcataccagttcaaaacgaa |
100 |
Q |
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| T |
3939407 |
agacaaacattagaatttaaagtgaagtttgacaattattgtaactttagctagtgagaagtgacactcataccagaccaaaacgaa |
3939321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 12651782 - 12651704
Alignment:
| Q |
398 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaag |
476 |
Q |
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| T |
12651782 |
ccacatttgagtcggaacgattggattggcgaggttgggtcacgcgtgagcatgactgagtagacaaaaagtcgaaaag |
12651704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 47606574 - 47606642
Alignment:
| Q |
496 |
ttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgt |
564 |
Q |
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| T |
47606574 |
ttggtcgtcgaagtgaaaattaagaactgagagccatagtgggttccatctctttgagaggatgcttgt |
47606642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 12505027 - 12504948
Alignment:
| Q |
398 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagc |
477 |
Q |
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| T |
12505027 |
ccacatttgaggtggaacaatcggatgggcaatgtggggtcacggatgagcatgactgagtagacgaaaagtcgaaaagc |
12504948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 12485994 - 12485932
Alignment:
| Q |
323 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
385 |
Q |
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| T |
12485994 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12485932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 12507426 - 12507364
Alignment:
| Q |
323 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
385 |
Q |
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||||| ||||||||| ||| |||||||||| || |||||||||||||||| |||||||||| |
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| T |
12507426 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12507364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 12658312 - 12658250
Alignment:
| Q |
323 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
385 |
Q |
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| T |
12658312 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12658250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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