View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17633_low_10 (Length: 409)
Name: NF17633_low_10
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_10 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0737 (1 HSPs) |
| | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 27870117 - 27870382
Alignment:
| Q |
22 |
aggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatgtaaag |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27870117 |
aggtgcgataataactttagattagaacgaggtttagattaggagaatggttgacgtataaatgacgatgaatgtgaggacgaagtaataagatgtaaag |
27870216 |
T |
|
| Q |
122 |
tcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggaggaaatgttatgataacgaataagt-aac |
220 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
27870217 |
gcgcgttaatgagaagaattagtatgaaggagttaatgacggtggtgaggtagaacctagttgtaaagagaggagatgttatgataacgaataagtaaac |
27870316 |
T |
|
| Q |
221 |
aacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatcctataata |
286 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27870317 |
aacttaagactaagaatgaggaatatggtatgatatcataataaagtatatatagatcctagaata |
27870382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 5943555 - 5943723
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| | ||| |||||||||||||||| | |||| ||||| | ||||||||| | || |||||||| |
|
|
| T |
5943555 |
aatgataaggtgtgataataatttcaaattagaacaaaattaagattaggagaatggtcaatgtatagatgacgaggaatgtgagaatgagataataaga |
5943654 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagtt |
183 |
Q |
| |
|
| ||||||||| |||||||||| ||||||| ||| |||||||||| ||||||||| |||||| |||| |
|
|
| T |
5943655 |
tataaagtcgctttaatgagaagaataagtttgaaagagttaatgacaatggtgaggaagaaccaagtt |
5943723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 16359189 - 16359347
Alignment:
| Q |
28 |
gataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatg-taaagtcgcg |
126 |
Q |
| |
|
||||||||||||||||||| | | || ||||||||||||| || || |||| ||||| | ||||||||| || | |||||||||| |||||||| |
|
|
| T |
16359189 |
gataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagattataaagtcgta |
16359288 |
T |
|
| Q |
127 |
ttaa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttg |
184 |
Q |
| |
|
|||| |||||| ||||| |||||| |||||||||| ||||||| || |||||||||||| |
|
|
| T |
16359289 |
ttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttg |
16359347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 19185371 - 19185205
Alignment:
| Q |
28 |
gataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgt |
127 |
Q |
| |
|
||||||||||| ||||||| | | || ||||||||||||| || || |||| |||||| ||||||||| || | |||||||||| |||||| | | |
|
|
| T |
19185371 |
gataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacagcgaatgtgagaacaaggtaataagatataaagttgttt |
19185272 |
T |
|
| Q |
128 |
taa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
||| |||||| ||||| |||||| ||||||||||||||||| | |||||||||||||| || ||||| |
|
|
| T |
19185271 |
taaatgagaagaataattacgaa--agttaatgatgatggtgggtaagaacctagttgtatagagagga |
19185205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 22924382 - 22924251
Alignment:
| Q |
19 |
ataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatgta |
118 |
Q |
| |
|
||||| || ||||||||||||||| ||||| || || || ||| |||||| | || |||| ||||| | ||||||||| || |||||||||||| || |
|
|
| T |
22924382 |
ataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatgtatatatgacgacgaatgtgagaacaaagtaataagatata |
22924283 |
T |
|
| Q |
119 |
aagtcgcgttaatgagaaaaataagtacgaag |
150 |
Q |
| |
|
||||| | |||||| ||| |||||||| |||| |
|
|
| T |
22924282 |
aagtcactttaatgggaagaataagtatgaag |
22924251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 18987031 - 18987291
Alignment:
| Q |
22 |
aggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatgtaaag |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18987031 |
aggtgcgataataactttagattagaacgaggttcagattaggagaatagttgacgtataaatgactatgaatgtgaggacgaagtaataagatgtaaag |
18987130 |
T |
|
| Q |
122 |
tcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggaggaaatgttatgataacgaataagt-aac |
220 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||| || ||| |
|
|
| T |
18987131 |
tcacgttaatgagaagaataagtatgaaggagttaatgatgatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaatatgtaaac |
18987230 |
T |
|
| Q |
221 |
aacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatccta |
281 |
Q |
| |
|
||| |||||| |||| || ||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
18987231 |
aacttaagaccaagattgaggaatatggtatgatgtcataataaagtatatatagatccta |
18987291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 24786678 - 24786414
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| || |||||||| |||||| || ||||||||| | ||| |||| || ||||||||||| |
|
|
| T |
24786678 |
aatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatgcataaatgactacgaacatgagaacaaagtaataaga |
24786579 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagg-------aaatgttatgata |
207 |
Q |
| |
|
|||||| | ||| |||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||| | |||| ||| || |
|
|
| T |
24786578 |
gataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaagagaggagacgttatatgtaatggta |
24786479 |
T |
|
| Q |
208 |
acgaataagtaacaacataagactaagaatgtggaatatggtatgatatcataataaattatata |
272 |
Q |
| |
|
| ||| |||||| | |||||||||||||||| |||||| ||||||||||| |||||| |||||| |
|
|
| T |
24786478 |
atgaacaagtaatatcataagactaagaatgaggaatagagtatgatatcagaataaagtatata |
24786414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 32251783 - 32251953
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacg-agattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataag |
113 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||| | |||| ||||||| |||||| | || |||||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
32251783 |
aatgataaggtgggatgataattttaaattagaatgtagata-agattagaagaatgatcgatgtataaatgacgacgaatgcgagaacgaagtaataag |
32251881 |
T |
|
| Q |
114 |
atgtaaagtcgcg--ttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagtt |
183 |
Q |
| |
|
|| |||| || | |||||||||| |||||| | ||| ||||||||||| || |||||| |||| |||||| |
|
|
| T |
32251882 |
atataaattctctctttaatgagaagaataagcatgaaagagttaatgataatagtgaggaagaatctagtt |
32251953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 29637481 - 29637377
Alignment:
| Q |
81 |
aaatgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaaccta |
180 |
Q |
| |
|
||||||| ||||| ||||| | ||||||||| || |||||| | |||||||||||||||| || ||| ||| |||||| |||||||||||| ||| | |
|
|
| T |
29637481 |
aaatgacgatgaacgtgag-atgaagtaatataatataaagttgttttaatgagaaaaataattatgaaagaggtaatgacgatggtgaggtaaaacatg |
29637383 |
T |
|
| Q |
181 |
gttgta |
186 |
Q |
| |
|
|||||| |
|
|
| T |
29637382 |
gttgta |
29637377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 44586052 - 44586108
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatgg |
71 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| || || |||||||| |||||| |
|
|
| T |
44586052 |
aatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaatgg |
44586108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 4301 - 4572
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
4301 |
aatgatcaagtgcgataataactttaaattagaatgaggttcaaattaggagaatggtttacgtatagatgacgatcaatgtgaggacgaagtaataaga |
4400 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggaggaaatgttatgataacgaata |
214 |
Q |
| |
|
||||||| || |||||||| | |||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4401 |
tgtaaaggtgcattaatgag-ataatatgtatgaaggagttaatgacgatggttaggtagaacctagttgtaaagggaggagatgttatgataacgaata |
4499 |
T |
|
| Q |
215 |
agt-aacaacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatcctataata |
286 |
Q |
| |
|
||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4500 |
agtaaacaacttaagactaagaatgaggaatatggtatgatatcataataaagtatatatagatcctagaata |
4572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 19546939 - 19547210
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||| | ||||||||||||||||||||| | |
|
|
| T |
19546939 |
aatgattaagtgcgataataactttaaattagaacgaggttcagattaggagaatggtttacgtatagatgacggtcaatgtgaggacgaagtaataaaa |
19547038 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggaggaaatgttatgataacgaata |
214 |
Q |
| |
|
||||||| | |||||||| | |||| ||| |||||||||||||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
19547039 |
tgtaaaggtgaattaatgag-ataatatgtatgaaggagttaatgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaata |
19547137 |
T |
|
| Q |
215 |
agt-aacaacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatcctataata |
286 |
Q |
| |
|
||| |||||| |||||||||||||| | |||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
19547138 |
agtaaacaacttaagactaagaatgagaaatatggtataatatcataataaagtatatatagatcctagaata |
19547210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 9191560 - 9191393
Alignment:
| Q |
16 |
atgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagat |
115 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||| || || |||||||||||||||| || |||| ||| | | ||| ||||| |||| |||||||||| |
|
|
| T |
9191560 |
atgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatgtatacatggcgacgaaagtgagaacgaggtaataagat |
9191461 |
T |
|
| Q |
116 |
gtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagtt |
183 |
Q |
| |
|
|||||| | ||||||||| |||||||| ||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
9191460 |
ataaagtaactttaatgagaggaataagtatgaaagagttaatgacaatggtgaggaagaacctagtt |
9191393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 8403391 - 8403574
Alignment:
| Q |
17 |
tgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacga----agtaataa |
112 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| | | || ||||||||||||| || || |||| ||||| | ||||||||| || | | |||||| |
|
|
| T |
8403391 |
tgataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaagataattaataa |
8403490 |
T |
|
| Q |
113 |
gatgtaaagtcgcgttaa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
||| |||||| | |||| |||||| ||||| |||||| |||||||||| ||||||| || |||||||||||||| || ||||| |
|
|
| T |
8403491 |
gatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttgtatagagagga |
8403574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 14970508 - 14970423
Alignment:
| Q |
104 |
aagtaataagatgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaag |
189 |
Q |
| |
|
|||||||||||| || ||| | ||| |||||| |||||||| |||||||||||||| |||||||| |||| | |||||||||||| |
|
|
| T |
14970508 |
aagtaataagatatacagtggttttattgagaagaataagtatgaaggagttaatgacgatggtgaagtagtatctagttgtaaag |
14970423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 18556515 - 18556785
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| || ||||||||||||||||||||| | |
|
|
| T |
18556515 |
aatgataaagtgcgataataactttaaattagaacgaggttcagattaggagaatggtttacgtatagatgaagatcaatgtgaggacgaagtaataaaa |
18556614 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggaggaaatgttatgataacgaata |
214 |
Q |
| |
|
||||||| || ||||||||| || || ||| ||||||||||||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
18556615 |
tgtaaaggtgcattaatgagataa-tatgtat-aaggagttaatgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaata |
18556712 |
T |
|
| Q |
215 |
agt-aacaacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatcctataata |
286 |
Q |
| |
|
||| ||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
18556713 |
agtaaacaaattaagactaagaatgagaaatatggtatgatatcataataaagtatatatagatcctagaata |
18556785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 11097989 - 11098254
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||| |||||| || ||||||||| | || |||| || ||||||||||| |
|
|
| T |
11097989 |
aatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggaagatgcataaatgactacaaacatgagaacaaagtaataaga |
11098088 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagg-------aaatgttatgata |
207 |
Q |
| |
|
|||||||| ||| |||||| |||||||| |||||| ||||||| ||||||||| ||| |||||||||||||| |||| | ||| |||||| |
|
|
| T |
11098089 |
gataaagtcgttttattgagaagaataagtatgaaggaattaatgacgatggtgagttaggacctagttgtaaagagaggagacattatatgaaatgata |
11098188 |
T |
|
| Q |
208 |
acgaataagt-aacaacataagactaagaatgtggaatatggtatgatatcataataaattatata |
272 |
Q |
| |
|
| ||| |||| || | | |||||||||||||| |||||| |||||||||||| |||||| |||||| |
|
|
| T |
11098189 |
atgaacaagtaaatatcttaagactaagaatgaggaataaggtatgatatcaaaataaagtatata |
11098254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 15872458 - 15872616
Alignment:
| Q |
28 |
gataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatg-taaagtcgcg |
126 |
Q |
| |
|
||||||||||||||||||| | | || ||||||||||||| || || |||| ||||| | ||||||||| || | |||||||||| |||||||| |
|
|
| T |
15872458 |
gataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagattataaagtcgta |
15872557 |
T |
|
| Q |
127 |
ttaa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttg |
184 |
Q |
| |
|
|||| |||||| ||||| |||||| |||||||||| ||||||| || |||||||||||| |
|
|
| T |
15872558 |
ttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttg |
15872616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 12229413 - 12229234
Alignment:
| Q |
17 |
tgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatg |
116 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||| | | || ||||||||||||| || || |||| ||||| | |||||||| || | | |||||||| |
|
|
| T |
12229413 |
tgataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacaaatgtgagaacaaggaaataagatt |
12229314 |
T |
|
| Q |
117 |
taaagtcgcgttaa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
|||||||| |||| |||||| ||||| |||||| | |||||||| ||||||| || |||||||||||||| || ||||| |
|
|
| T |
12229313 |
taaagtcgttttaaatgagaagaataattacgaaagcgttaatgacgatggtgtggaagaacctagttgtatagagagga |
12229234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 15890050 - 15890208
Alignment:
| Q |
28 |
gataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatg-taaagtcgcg |
126 |
Q |
| |
|
||||||||||||||||||| | | || ||||||||| ||| || || |||| ||||| | ||||||||| || | |||||||||| |||||||| |
|
|
| T |
15890050 |
gataataactttaaattaggattaagttaagattaggaaaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagattataaagtcgtt |
15890149 |
T |
|
| Q |
127 |
ttaa-tgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttg |
184 |
Q |
| |
|
|||| |||||| ||||| |||||| |||||||||| ||||||| || |||||||||||| |
|
|
| T |
15890150 |
ttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttg |
15890208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 11556449 - 11556393
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatgg |
71 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| || || |||||||| |||||| |
|
|
| T |
11556449 |
aatgatatggtgagataataactttaaattagaatgaagttaagattaggggaatgg |
11556393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 18220389 - 18220445
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatgg |
71 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| || || |||||||| |||||| |
|
|
| T |
18220389 |
aatgataaggtgagataataactttatattagaatgaagttaagattaggggaatgg |
18220445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 83 - 286
Target Start/End: Original strand, 13772 - 13976
Alignment:
| Q |
83 |
atgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagt |
182 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
13772 |
atgacgatgaatgtgaggacaaagtaataagatgtaaagtcacgttaatgagaaaaataagtatgaaggagttaatgacaatggtgaggtagaacctact |
13871 |
T |
|
| Q |
183 |
tgtaaagggaggaaatgttatgataacgaataagt-aacaacataagactaagaatgtggaatatggtatgatatcataataaattatatatagatccta |
281 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
13872 |
tgtaaatagagtagatgttatgataacgaataagtaaacaacttaagaccaagaatgaggaatatggtatgatatcataataaagtatatatagatacta |
13971 |
T |
|
| Q |
282 |
taata |
286 |
Q |
| |
|
|||| |
|
|
| T |
13972 |
gaata |
13976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 37945416 - 37945596
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||| | || |||||||||||||| ||| | |||| ||||| ||||||||||| |||| ||||||||| |
|
|
| T |
37945416 |
aatgaaaaggtgagataataactttaatttagaatcaagttaagattaggagaatgattggcgtatagatgacgatgaatgtgagaacgaggtaataaga |
37945515 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
| || |||||| || |||| | ||| |||| ||| ||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
37945516 |
tatatagtcgctttggtgagcagaatgagtatgaaagagttaatgatgatggtgaggaagaacctagttgtatagggagga |
37945596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 13477256 - 13477436
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||| || |||||||| |||||| || || ||||| | || |||| || ||||||||||| |
|
|
| T |
13477256 |
aatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacgcatggatgactacaaacatgagaacaaagtaataaga |
13477355 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
| ||||||| ||| |||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13477356 |
tataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaagagagga |
13477436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 20026505 - 20026331
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataaga |
114 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||| || || |||||||| |||||| || ||| |||| |||||| |||| || || |||||||| |
|
|
| T |
20026505 |
aatgatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatgcatatatgaatatgaatatgagaacaaattaataaga |
20026406 |
T |
|
| Q |
115 |
tgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaag |
189 |
Q |
| |
|
| |||| | ||| |||||| ||| |||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
20026405 |
tataaattatttttattgagaagaatcagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaag |
20026331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 4531365 - 4531421
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatgg |
71 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
4531365 |
aatgataaggtgagataataactttaaattagaacgaagttaagattaggtgaatgg |
4531421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 23960571 - 23960682
Alignment:
| Q |
75 |
acatataaatgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtag |
174 |
Q |
| |
|
||||||| | ||| ||||||||||| ||| |||||||||| || |||| |||||||||| |||||||||| |||||||||| |||||||||| || |
|
|
| T |
23960571 |
acatatagaagacgatgaatgtgagagcgaggtaataagatatagagtcaatttaatgagaagaataagtacggtagagttaatgacgatggtgaggaag |
23960670 |
T |
|
| Q |
175 |
aacctagttgta |
186 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23960671 |
aacctagttgta |
23960682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 17458356 - 17458279
Alignment:
| Q |
117 |
taaagtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgtaaagggagga |
195 |
Q |
| |
|
||||||||| |||||| ||| ||||||||| ||| ||||||||| |||||||||| |||||||||||||| || ||||| |
|
|
| T |
17458356 |
taaagtcgctttaatgggaagaataagtacaaag-agttaatgacgatggtgagggagaacctagttgtatagagagga |
17458279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 13936128 - 13936063
Alignment:
| Q |
121 |
gtcgcgttaatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctagttgta |
186 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| |||||||||| ||||||| || |||||||||||||| |
|
|
| T |
13936128 |
gtcgctttaatgagaaagataagtaagaaagagttaatgacgatggtggggaagaacctagttgta |
13936063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 13937448 - 13937393
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatg |
70 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || || ||||||| |||||| |
|
|
| T |
13937448 |
aatgataaggtgagataataactttaaattagaatgaagttaagattagaagaatg |
13937393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0737 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0737
Description:
Target: scaffold0737; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 3262 - 3318
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacgagattcagattaggagaatgg |
71 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
3262 |
aatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatgg |
3318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 14740 - 14575
Alignment:
| Q |
17 |
tgataaggtgcgataataactttaaattagaacgagattcagattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatg |
116 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| | | || |||||||||||| || || |||| ||||| | ||||||||| || | |||||||||| |
|
|
| T |
14740 |
tgataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagata |
14641 |
T |
|
| Q |
117 |
taaagtcgcgtt-aatgagaaaaataagtacgaaggagttaatgatgatggtgaggtagaacctag |
181 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| |||||||| | ||||||| || ||||||||| |
|
|
| T |
14640 |
taaagtcgttttaaatgagaagaataatcacgaaagagttaataacgatggtggggaagaacctag |
14575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 10574 - 10463
Alignment:
| Q |
57 |
agattaggagaatggttgacatataaatgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgtt-aatgagaaaaataagtacgaaggagtt |
155 |
Q |
| |
|
||||||||||||| || || |||| ||||| | ||||||||| || | |||||||||| |||||||| || ||| |||| ||||| |||||| ||||| |
|
|
| T |
10574 |
agattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatataaagtcgttttaaattagaagaataattacgaa-gagtt |
10476 |
T |
|
| Q |
156 |
aatgatgatggtg |
168 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
10475 |
aatgacgatggtg |
10463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 131239 - 131160
Alignment:
| Q |
78 |
tataaatgacaatgaatgtgaggacgaagtaataagatgtaaagtcgcgttaatgagaaaaataagtacgaaggagttaat |
158 |
Q |
| |
|
|||||||||| | ||| ||||| || |||||||||||| |||||||| ||| |||||| |||||||| ||| |||||||| |
|
|
| T |
131239 |
tataaatgacgacgaacgtgagaac-aagtaataagatataaagtcgttttattgagaagaataagtaggaaagagttaat |
131160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 1566684 - 1566720
Alignment:
| Q |
15 |
aatgataaggtgcgataataactttaaattagaacga |
51 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1566684 |
aatggtaaggtgggataataactttaaattagaacga |
1566720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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