View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_16 (Length: 320)
Name: NF17633_low_16
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 28916613 - 28916773
Alignment:
| Q |
13 |
cagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
112 |
Q |
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| T |
28916613 |
cagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
28916712 |
T |
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| Q |
113 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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| T |
28916713 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28892245 - 28892407
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
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| T |
28892245 |
cacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggt |
28892344 |
T |
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| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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| T |
28892345 |
cgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 28925848 - 28925999
Alignment:
| Q |
22 |
atcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcac |
121 |
Q |
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| T |
28925848 |
atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
28925947 |
T |
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| Q |
122 |
caatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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| T |
28925948 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28902199 - 28902361
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
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| T |
28902199 |
cacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagt |
28902298 |
T |
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| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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| T |
28902299 |
cgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 28916836 - 28916904
Alignment:
| Q |
236 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagatt |
304 |
Q |
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| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagatt |
28916904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
| Q |
76 |
atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
170 |
Q |
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| T |
28935507 |
atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 28902437 - 28902501
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagatt |
304 |
Q |
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| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagatt |
28902501 |
T |
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