View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_17 (Length: 303)
Name: NF17633_low_17
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 28102757 - 28103032
Alignment:
| Q |
18 |
gtttgatccattcagtttcctacaattttgaagattgtgtcccagaacttccaattgacacaaaaaggaggctgtttctcatattggatatcaatggata |
117 |
Q |
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| T |
28102757 |
gtttgatccattcagtttcctacaattttgaagattgtgtcccagaacttccaattgacacaaaaaggaggctgtttctcatattggatatcaatggata |
28102856 |
T |
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| Q |
118 |
gagcgtacccttcagtttcaacaaccactgactcaaataattgctcagacagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102857 |
gagcgtacccttcagtttcaacaaccactgactcaaataattgctcagacagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaag |
28102956 |
T |
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| Q |
218 |
agtagcgtcatcaatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttgtcttcctccaatattctt |
294 |
Q |
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| T |
28102957 |
agtag-gtcatcaatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttctcttcctccaatattctt |
28103032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 36905246 - 36904969
Alignment:
| Q |
18 |
gtttgatccattcagtttcctacaattttgaagattgtgtcccagaacttc-caattgacacaaaaaggaggctgtttctcatattggatatcaatggat |
116 |
Q |
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| T |
36905246 |
gtttgatccattcagtttcctacaattttgaagattgtgtcccagaactttacaattgactcaaaaaggaggttacttctcatattggatatcaatggat |
36905147 |
T |
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| Q |
117 |
agagcgtacccttcagtttcaacaaccactgactcaaataattgctcagacagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaa |
216 |
Q |
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| T |
36905146 |
agaatgtacccttcaatttcaacaaccactgactcaaataattgttcagatagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaa |
36905047 |
T |
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| Q |
217 |
gagtagcgtcatcaatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttgtcttcctccaatattctt |
294 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
36905046 |
gagtagcatcatcaatagcaagaggagtgcctaaaccgaaagcaatctcaaaaagggccgtcttcctccaatattctt |
36904969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 38983295 - 38983226
Alignment:
| Q |
225 |
tcatcaatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttgtcttcctccaatattctt |
294 |
Q |
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| T |
38983295 |
tcatcaattgcaagaggggtacctaagcctgaagcaatctcaaacagggttgtcttcctctaatattctt |
38983226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 294
Target Start/End: Complemental strand, 51523755 - 51523490
Alignment:
| Q |
31 |
agtttcctacaattttgaagattgtgtcccagaacttc-caattgacacaaaaaggaggctgtttctcatattggatatcaatggatagagcgtaccctt |
129 |
Q |
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|||||| |||||||||| ||| | || |||| ||||| ||||| |||||||| | || || ||||||||||||| |||||| ||| ||| | |||| |
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| T |
51523755 |
agtttcatacaattttgcagaatatgccccaaaactttacaattagcacaaaaaagtggttgcttctcatattggacatcaataaataaagcatggcctt |
51523656 |
T |
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| Q |
130 |
cagtttcaacaaccactgactcaaataattgctcagacagatcaacatctacaagcacccttgcaaaga-ccccaaatcttctactaagagtagcgtcat |
228 |
Q |
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| T |
51523655 |
ctgtttccacaaccacatactcaaataactgctcagaaaggtcaacatccacaagaatcctggcaaaaacccccataacgtctacttatagtagcttcat |
51523556 |
T |
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| Q |
229 |
caatagcaagaggagtgcctaaaccataagcaatctcaaaaagggttgtcttcctccaatattctt |
294 |
Q |
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|||| | |||||| || | || ||| | | ||||||||| | ||||| || ||||||||||||| |
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| T |
51523555 |
caatggaaagaggggtacacaatccagaggaaatctcaaacaaagttgtttttctccaatattctt |
51523490 |
T |
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