View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_18 (Length: 290)
Name: NF17633_low_18
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 32 - 273
Target Start/End: Original strand, 4842258 - 4842500
Alignment:
| Q |
32 |
acaaaactagccagtatagttttatctctatagtctaaatacattattgttgtaatttactaaaattattgatctataacaataaccatatacgaagact |
131 |
Q |
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| T |
4842258 |
acaaaactagccagtatagttttatctctatagtctaaatacattattgttgtcatttactaaaattattgatctataacaataaccatatacgaagaat |
4842357 |
T |
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| Q |
132 |
acctcnnnnnnnnnnnnnnn-cgtacgaagaacaatcaatcatcgggataatacatatccttattttatttatttgaatttgaatggcaaccaccaaagc |
230 |
Q |
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| T |
4842358 |
acctcaaaaaaaaacaaaaaacgtacgaaggagaatcaaccatctggataatacatatccttattttatttatttgaatttgaatggcaaccaccaaagc |
4842457 |
T |
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| Q |
231 |
cacatatagaaagaatattttcctaccaatcgtacatgatgcc |
273 |
Q |
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| T |
4842458 |
cacatatagaaagaatattttcctaccaatcgtacatgatgcc |
4842500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 4868075 - 4868196
Alignment:
| Q |
152 |
cgtacgaagaacaatcaatcatcgggataatacatatccttattttatttatttgaatttgaatggcaaccaccaaagccacatatagaaagaatatttt |
251 |
Q |
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| T |
4868075 |
cgtacgaaggagaatcaaccatctggataatacatatccttattttatttatttgaatttgaatggcaaccaccaaagccacatatagaaagaatatttt |
4868174 |
T |
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| Q |
252 |
cctaccaatcgtacatgatgcc |
273 |
Q |
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| T |
4868175 |
cctaccaatcgtacatgatgcc |
4868196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 4826736 - 4826815
Alignment:
| Q |
176 |
ggataataca-tatccttattttatttatttgaatttgaatggcaaccaccaaagccacatatagaaagaatattttcct |
254 |
Q |
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| T |
4826736 |
ggataatacaatatccttattttatttatttgaatttgaatggcaaccaccaaggccacatatagaaagaataatttcct |
4826815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 4868013 - 4868054
Alignment:
| Q |
95 |
aattattgatctataacaataaccatatacgaagactacctc |
136 |
Q |
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| T |
4868013 |
aattattgatctataacaataaccatatacgaagactacctc |
4868054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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