View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17633_low_2 (Length: 672)

Name: NF17633_low_2
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17633_low_2
NF17633_low_2
[»] chr3 (5 HSPs)
chr3 (232-442)||(6078915-6079126)
chr3 (6-167)||(6079191-6079352)
chr3 (537-653)||(6078709-6078825)
chr3 (280-418)||(11028878-11029016)
chr3 (17-94)||(11028675-11028752)
[»] chr6 (5 HSPs)
chr6 (234-372)||(13549165-13549307)
chr6 (6-103)||(19215354-19215449)
chr6 (299-442)||(7457785-7457928)
chr6 (243-442)||(31876072-31876270)
chr6 (6-73)||(13548896-13548963)
[»] scaffold0017 (4 HSPs)
scaffold0017 (243-442)||(39421-39611)
scaffold0017 (537-631)||(39664-39759)
scaffold0017 (15-98)||(39144-39228)
scaffold0017 (128-167)||(39286-39325)
[»] chr8 (1 HSPs)
chr8 (242-352)||(21350191-21350301)
[»] chr1 (1 HSPs)
chr1 (15-76)||(19190469-19190530)
[»] chr2 (1 HSPs)
chr2 (15-98)||(13652915-13652999)
[»] chr4 (1 HSPs)
chr4 (243-358)||(51030972-51031086)
[»] chr7 (1 HSPs)
chr7 (242-358)||(26645270-26645384)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 6e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 232 - 442
Target Start/End: Complemental strand, 6079126 - 6078915
Alignment:
Q  232 tgtaaacaaacctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatg--aggatttgcatttgggccagggtgaaagg 329  Q
    ||||||||| ||||||||||||||||||||||||||| |   |||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcctccaaccttcatcattttgtgcaagtgctatgtgaggatttgcatttaggccagggtgaaagg 6079027  T
Q  330 gttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaa 429  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  6079026 gttacctcgatggctccctattttccttaaatattagtttgtcccttctctttctctac-cttgtctttcatctcacattgaaccgatgttgatagaaaa 6078928  T
Q  430 caaatagtaaatg 442  Q
    |||||||||||||    
T  6078927 caaatagtaaatg 6078915  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 6079352 - 6079191
Alignment:
Q  6 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnn 105  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  6079352 tgggtaaagtatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaagaa 6079253  T
Q  106 nnnnnnnccaaattattttctttgttcatcatctctatttacatcagactttcattttctac 167  Q
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079252 aaaaaaaccaaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 537 - 653
Target Start/End: Complemental strand, 6078825 - 6078709
Alignment:
Q  537 atagtattaaaattgtaccatttccctctaaccccctctctcaatttgttggtttttaccaagcacgtgcaaccaccggcttcttgaaagataacaacaa 636  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6078825 atagtattaaaattgtaccatttccctctaacccgctctctcaatttgttcgtttttaccaaacacgtgcaaccaccggcttcttgaaagataacaacaa 6078726  T
Q  637 atcattctatatcaatt 653  Q
    |||||||||||||||||    
T  6078725 atcattctatatcaatt 6078709  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 11028878 - 11029016
Alignment:
Q  280 tcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctc 379  Q
    ||||| ||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||| | ||||| ||||||| ||||  || ||    
T  11028878 tcattatgtgcgagtgctatgaggatttgcatttaggccacggtgaaagggttacctcgatgactccctattctccttaattattagtgtgtctcttgtc 11028977  T
Q  380 tttctctactcttgtctttcatctcacattgaaccgatg 418  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  11028978 ttcctctactcttgtcttccatctcacattgaaccgatg 11029016  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  17 tacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 94  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 13549165 - 13549307
Alignment:
Q  234 taaacaaacctctctctctccaaaaaccttatgccccatt-ccttcatcattttgtgcaagt---gttatgaggatttgcatttgggccagggtgaaagg 329  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||   ||| ||||||||| ||||| ||||| ||| |||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgccccctttccttcatcatttcgtgcgagtcatgttgtgaggatttacatttaggccacggtcaaagg 13549264  T
Q  330 gttacctcaatggctccctatttttcttaaatattagtttgtc 372  Q
    || ||||| ||||||||||||||| |||| |||||| ||||||    
T  13549265 gtgacctcgatggctccctattttccttagatattattttgtc 13549307  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 19215354 - 19215449
Alignment:
Q  6 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 103  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215354 tgggtaaagtatacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 299 - 442
Target Start/End: Original strand, 7457785 - 7457928
Alignment:
Q  299 tgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtcttt 398  Q
    |||| |||||||||| | |||  || ||||||| ||||  ||||||||||||||| |||| |||||| ||| ||  | | |||||| |||||||||| |     
T  7457785 tgagcatttgcatttagtccactgtcaaagggtgacctagatggctccctattttccttacatattattttatctctcccctttctatactcttgtcctc 7457884  T
Q  399 catctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 442  Q
     |||||||||||||| ||  ||||||||||| ||||||||||||    
T  7457885 tatctcacattgaacagagtttgatcgaaaataaatagtaaatg 7457928  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 442
Target Start/End: Complemental strand, 31876270 - 31876072
Alignment:
Q  243 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 342  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||  |||||| |||| |||||||||| | ||   |  ||| |||  |||  ||||    
T  31876270 ctctctctctccaaaaatcttatgcccc-ttcctctatcattttgtgtgagtgttgtgagcatttgcatttagacccctgccaaatggtggcctagatgg 31876172  T
Q  343 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 442  Q
    ||||||||||| |||| |||||| ||| ||  | | ||| || |||||||||| |  |||||||||||||| ||  ||||||||| | ||||||||||||    
T  31876171 ctccctattttccttacatattattttatctctccccttcctatactcttgtcctctatctcacattgaacagagtttgatcgaatataaatagtaaatg 31876072  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 13548896 - 13548963
Alignment:
Q  6 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaa 73  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548896 tgggtaaagtatacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

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Target: scaffold0017 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 243 - 442
Target Start/End: Original strand, 39421 - 39611
Alignment:
Q  243 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 342  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||    |||      ||||| |||||| ||||| ||| ||||||| ||||  ||||    
T  39421 ctctctctctccaaaaaccttatgccctcttccttcatcatttcgtc---gtg------ggattcgcatttaggccatggtcaaagggtgacctagatgg 39511  T
Q  343 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 442  Q
     ||||||||||||||| |||||| ||||||  ||||||| ||||||| ||||| | |||||||||||||| ||  | |||||||||||||||||||||||    
T  39512 ttccctatttttcttagatattattttgtctattctcttcctctacttttgtcctccatctcacattgaatcggagctgatcgaaaacaaatagtaaatg 39611  T

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Target: scaffold0017; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 537 - 631
Target Start/End: Original strand, 39664 - 39759
Alignment:
Q  537 atagtattaaaattgtaccatttccctctaaccccctctctcaatttgttggtttt-taccaagcacgtgcaaccaccggcttcttgaaagataac 631  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||  |||||||| |||||||||    
T  39664 atagtagtaaaattgtacgatttccctctaaccccctctctcaatttgttggttttctaataagcacgtgcaaccaatggcttcttaaaagataac 39759  T

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Target: scaffold0017; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 39144 - 39228
Alignment:
Q  15 tatacttgagtaacacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 98  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39144 tatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  128 tgttcatcatctctatttacatcagactttcattttctac 167  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 21350191 - 21350301
Alignment:
Q  242 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 341  Q
    |||| ||| |||||||||||||||||||| |||||  |||||||||||| |||| ||||| ||||||||||| ||| |  || ||||||| ||||| |||    
T  21350191 cctccctccctccaaaaaccttatgcccccttcctctatcattttgtgcgagtgctatgaagatttgcatttaggctatagtcaaagggtgacctcgatg 21350290  T
Q  342 gctccctattt 352  Q
    || ||||||||    
T  21350291 gcaccctattt 21350301  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 19190530 - 19190469
Alignment:
Q  15 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 76  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190530 tatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 13652915 - 13652999
Alignment:
Q  15 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 98  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652915 tatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 51030972 - 51031086
Alignment:
Q  243 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 342  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||||||||| |||||  |  ||||||| || |  ||||    
T  51030972 ctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgatgtgaggatttgcatttaggccactgccaaagggtgacatagatgg 51031070  T
Q  343 ctccctatttttctta 358  Q
    ||||||||||| ||||    
T  51031071 ctccctattttcctta 51031086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 26645384 - 26645270
Alignment:
Q  242 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 341  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||| ||||| |||||  |  ||||||| ||||  |||    
T  26645384 cctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgctgtgaggattt-catttaggccactgccaaagggtgacctagatg 26645287  T
Q  342 gctccctatttttctta 358  Q
    |||||||||||| ||||    
T  26645286 gctccctattttcctta 26645270  T

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