View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_21 (Length: 270)
Name: NF17633_low_21
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 42875409 - 42875154
Alignment:
| Q |
6 |
gtcttgatacatctgtgaatggtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttatgatac |
105 |
Q |
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| T |
42875409 |
gtcttgatacatctgtgaatggtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttatgatac |
42875310 |
T |
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| Q |
106 |
tgttaaggatgtctttgttccagataatggctttgagaataatcaaaatgtgttgagatatgattatgggaaatattatgcatcaaaaacattttttgat |
205 |
Q |
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| T |
42875309 |
tgttaaggatgtctttgttccagataatggctttgagaataatcaaaatgtgttgagatatgattatgggaaatattatgcatcaaaaacattttttgat |
42875210 |
T |
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| Q |
206 |
gatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtgttgt |
261 |
Q |
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| T |
42875209 |
gatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtgttgt |
42875154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 5903080 - 5903182
Alignment:
| Q |
158 |
ttgagatatgattatgggaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtg |
257 |
Q |
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| T |
5903080 |
ttgagatatgattatggaaaatattatgcatcaaaaactttctttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtg |
5903179 |
T |
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| Q |
258 |
ttg |
260 |
Q |
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| T |
5903180 |
ttg |
5903182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 5902943 - 5903016
Alignment:
| Q |
27 |
gtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttat |
100 |
Q |
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| T |
5902943 |
gtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttat |
5903016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 27990719 - 27990626
Alignment:
| Q |
161 |
agatatgattatgggaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaa |
254 |
Q |
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| T |
27990719 |
agatatgattatggtaagttttatgcatctaaaacattttacgatgatgcaaaaaagagaagagtcttatggggttggattaatgaatcttcaa |
27990626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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