View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_28 (Length: 223)
Name: NF17633_low_28
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_28 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 47615 - 47791
Alignment:
| Q |
30 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||| |
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| T |
47615 |
agaagctaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatc |
47714 |
T |
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| Q |
130 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctg |
206 |
Q |
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| T |
47715 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctg |
47791 |
T |
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Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 20134251 - 20134075
Alignment:
| Q |
30 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
129 |
Q |
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| T |
20134251 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
20134152 |
T |
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| Q |
130 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
20134151 |
gtgtcaggtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctg |
20134075 |
T |
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Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 44357820 - 44357996
Alignment:
| Q |
30 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
44357820 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
44357919 |
T |
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| Q |
130 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
44357920 |
gtgtcaggtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctg |
44357996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 12325444 - 12325596
Alignment:
| Q |
37 |
aaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatcgtgtcag |
136 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
12325444 |
aaggcaatattccgaacttcgccaacacc---gccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
12325540 |
T |
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| Q |
137 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcgg |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12325541 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgagtcgg |
12325596 |
T |
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