View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17633_low_29 (Length: 214)

Name: NF17633_low_29
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17633_low_29
NF17633_low_29
[»] chr3 (2 HSPs)
chr3 (1-198)||(26970498-26970695)
chr3 (143-196)||(33239778-33239831)
[»] chr1 (1 HSPs)
chr1 (121-198)||(41101067-41101147)
[»] chr8 (1 HSPs)
chr8 (146-198)||(39577429-39577481)
[»] chr2 (1 HSPs)
chr2 (142-189)||(15481029-15481076)
[»] chr4 (1 HSPs)
chr4 (48-94)||(11450263-11450309)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 26970498 - 26970695
Alignment:
Q  1 aagaagatcaaaagggttcgacaattacaaaaagcctagtcatttagttgttgattgtcaagagttagagaaggacaagtcaaataaggagagcacattc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  26970498 aagaagatcaaaagggttcgtcaattacaaaaagcctagtcatttagttgttgattgtcaagagttacagaaggacaagtcaaataaggagagcacgttc 26970597  T
Q  101 agnnnnnnnnnnnnnnnnnnctaagtttcaatattgtacactatgtaatagagaatacaatgacaacatgtttttcgagaaacattgtcttcggtagt 198  Q
     |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26970598 ggttttttttctttttctttctaagtttcaatattgtacactatgtaatagagaatacaatgacaacatgttttccgagaaacattgtcctcggtagt 26970695  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 33239778 - 33239831
Alignment:
Q  143 atgtaatagagaatacaatgacaacatgtttttcgagaaacattgtcttcggta 196  Q
    |||||||| |||||||||||||||||||| || |||||||||||||| ||||||    
T  33239778 atgtaataaagaatacaatgacaacatgtattccgagaaacattgtcctcggta 33239831  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 41101147 - 41101067
Alignment:
Q  121 ctaagtttcaatattgtacacta---tgtaatagagaatacaatgacaacatgtttttcgagaaacattgtcttcggtagt 198  Q
    |||||||||||||||||||||||   |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  41101147 ctaagtttcaatattgtacactactatgtaatagagaatacagtgacaacatgttttccgagaaacattgtcctcggtagt 41101067  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 39577481 - 39577429
Alignment:
Q  146 taatagagaatacaatgacaacatgtttttcgagaaacattgtcttcggtagt 198  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  39577481 taatagagaatacaatgacaacatgtattccgagaaacattgtcctcggtagt 39577429  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 15481029 - 15481076
Alignment:
Q  142 tatgtaatagagaatacaatgacaacatgtttttcgagaaacattgtc 189  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  15481029 tatgtaatagagaatataatgacaacatgtttttcgaaaaacattgtc 15481076  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 11450263 - 11450309
Alignment:
Q  48 ttgttgattgtcaagagttagagaaggacaagtcaaataaggagagc 94  Q
    |||||||||||| ||||||| ||||||||||||| || |||||||||    
T  11450263 ttgttgattgtccagagttacagaaggacaagtcgaagaaggagagc 11450309  T

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