View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_30 (Length: 208)
Name: NF17633_low_30
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_30 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 30208835 - 30208663
Alignment:
| Q |
15 |
gtgagaagaagtgagcgtgccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagttaagaagatcaagggga |
114 |
Q |
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| T |
30208835 |
gtgagaagaagtgagcgtgccaagaagagtagcagatcattgaacgaggattacttgttagatgtagaggaggagctggaagttaagaagattaagggga |
30208736 |
T |
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| Q |
115 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggaggggga |
187 |
Q |
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| T |
30208735 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggaggggga |
30208663 |
T |
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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 411065 - 410994
Alignment:
| Q |
34 |
ccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagttaagaaga |
105 |
Q |
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| T |
411065 |
ccaagaagagtagtagatcattgaaggatgattacatgtcagatgtggaggaggaagtggaagtgaagaaga |
410994 |
T |
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