View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_31 (Length: 207)
Name: NF17633_low_31
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 45659361 - 45659187
Alignment:
| Q |
15 |
tgagatgaagccaccaacaagagagagcaagaaagttgaacccatgaagtttgtgagagtattggcagaacttggtatatcaaagtgcatcactccataa |
114 |
Q |
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| T |
45659361 |
tgagatgaagccaccaactagagaaagcaagaaagttgaacccatgaagtttgtgagagtatttgcagaacttggtatatcaaagtgcatcactccataa |
45659262 |
T |
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| Q |
115 |
aaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaac |
189 |
Q |
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| T |
45659261 |
aaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaac |
45659187 |
T |
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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 37984180 - 37984345
Alignment:
| Q |
15 |
tgagatgaagccaccaacaagagagagcaagaaagttgaacccatgaagtttgtgagagtattggcagaacttggtatatcaaagtgcatcactccataa |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||| || ||||| | ||| |||||||| |||| | ||||||||||||||||||| | |
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| T |
37984180 |
tgagatgaaggcaccaacaagagagagcaagaaagttgagcccataaaatttgtcaaagtgttggcagagcttgaaagatcaaagtgcatcactccaata |
37984279 |
T |
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| Q |
115 |
aaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactaca |
180 |
Q |
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|| ||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
37984280 |
aagtatagtactaagctcaccatgtttgtcacaaaacccatgttatccaatgctgacaaaactaca |
37984345 |
T |
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