View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17633_low_4 (Length: 553)
Name: NF17633_low_4
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17633_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 58 - 536
Target Start/End: Complemental strand, 3340083 - 3339605
Alignment:
| Q |
58 |
cttgatcaaataaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgttttta |
157 |
Q |
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| T |
3340083 |
cttgatcaaataaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgttttta |
3339984 |
T |
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| Q |
158 |
aactatgtttcaaattctcttttaattttaaaattctcgtcacataaatctttgtcaaataatttcattgactaaattgatttgatcccttcgaaattat |
257 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
3339983 |
aactatgtttaaaattctcttttaattttaaaattctcatcacataaatctttgtcaaatagtttcattgaataaattgatttgatcccttcgaaattat |
3339884 |
T |
|
| Q |
258 |
acgacaaaattaatttgattcaaaagacattccaaatattaacaattttaaataggcttaaa-gcgaattttggtttaccttcattttgtattcatgagn |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3339883 |
acgacaaaattaatttgattcaaaagacattccaaatattaacaattttaaataggcttaaaggcgaattttggtttaccttcattttgtattcatgaga |
3339784 |
T |
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| Q |
357 |
nnnnnngacatattagtttggtaataaaatgaatctcataaagctatcagatgtgtatatctctctcgtagacaataaatagagtacggataataatact |
456 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||| | |
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| T |
3339783 |
aaaaaagacata-tagtttggtgataaaatgaatctcataaagctatcacatgtgtatatctctctcgtagacaataaatagagtaaggttaatgatagt |
3339685 |
T |
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| Q |
457 |
tgacacgacaaaataagtgcatgactcatagcacgacatatttaaaaccgttggatgattgtttgttgttttataccatt |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3339684 |
tgacacgacaaaataagtgcatgactcatagcacgacatatttaaaaccgttggatgattgtttgttgttttataccatt |
3339605 |
T |
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