View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17633_low_5 (Length: 512)

Name: NF17633_low_5
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17633_low_5
NF17633_low_5
[»] chr2 (4 HSPs)
chr2 (18-492)||(41065609-41066083)
chr2 (278-322)||(40776069-40776113)
chr2 (283-322)||(750505-750544)
chr2 (293-328)||(33580552-33580587)
[»] chr4 (2 HSPs)
chr4 (21-177)||(23032953-23033109)
chr4 (272-328)||(52754647-52754703)
[»] chr3 (4 HSPs)
chr3 (273-328)||(34254775-34254830)
chr3 (278-319)||(24624267-24624308)
chr3 (285-323)||(25182966-25183004)
chr3 (278-322)||(27290873-27290917)
[»] chr8 (4 HSPs)
chr8 (278-323)||(29169908-29169953)
chr8 (285-328)||(29168644-29168687)
chr8 (278-311)||(39881693-39881726)
chr8 (271-311)||(9562227-9562267)
[»] chr1 (1 HSPs)
chr1 (257-322)||(11639367-11639432)
[»] chr6 (3 HSPs)
chr6 (278-328)||(3738117-3738167)
chr6 (285-322)||(2767728-2767765)
chr6 (278-322)||(32976032-32976076)
[»] chr7 (1 HSPs)
chr7 (18-82)||(40421848-40421912)


Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 41066083 - 41065609
Alignment:
Q  18 aagaagggccagacagcgcttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttg 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41066083 aagaagggccagacagcacttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttg 41065984  T
Q  118 ataataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaattacataatgcttgtcaaattccatagacatatactaggtac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41065983 ataataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaattacataatgcttgtcaaattccatagacatatactaggtac 41065884  T
Q  218 tagggtctgtttgtattgaattatttgagtttgttttctggcataagcacgttcgaaacagtttggaagagcttgtgaaaacagcttatgacatatccat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41065883 tagggtctgtttgtattgaattatttgagtttgttttctggcataagcacgttcgaaacagtttggaagagcttgtgaaaacagcttatgacatatccat 41065784  T
Q  318 aagctactttctgcaacttaattttgaaatcggtcattgacaatggaaaaggaaaattattgacatctgtttctgagaggctaaaatatgtaaatttgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41065783 aagctactttctgcaacttaattttgaaatcggtcattgacaatggaaaaggaaaattattgacatctgtttctgagaggctaaaatatgtaaatttgtt 41065684  T
Q  418 tgtgcagattgtaaatatgcttctaggacaaaaggaaacagatgtaagtgctgttaacagatcaggtgaaacagc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41065683 tgtgcagattgtaaatatgcttctaggacaaaaggaaacagatgtgagtgctgttaacagatcaggtgaaacagc 41065609  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 40776069 - 40776113
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataagct 322  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||    
T  40776069 gtttggaagaacttatgaaaacagcttatgacatatgcataagct 40776113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 750544 - 750505
Alignment:
Q  283 gaagagcttgtgaaaacagcttatgacatatccataagct 322  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  750544 gaagagcttatgaaaacagcttataacatatccataagct 750505  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 33580587 - 33580552
Alignment:
Q  293 tgaaaacagcttatgacatatccataagctactttc 328  Q
    |||||||||||||||||||||||||||||| |||||    
T  33580587 tgaaaacagcttatgacatatccataagctgctttc 33580552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 23033109 - 23032953
Alignment:
Q  21 aagggccagacagcgcttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttgata 120  Q
    ||||| ||||| |||||||||||||| || |||||||| | ||||| ||| || || ||| |||||||||||||||| ||||||||||||||||||||||    
T  23033109 aagggacagacggcgcttcacatggcggtgaagggacagagtcttgtggtggtagaggagttgataaaagcagatccatcaacaataaacatggttgata 23033010  T
Q  121 ataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaatt 177  Q
    |||| || || ||| |  ||||||||||||||||||| |  ||||||| ||||||||    
T  23033009 ataagggtaatacagcgctgcatatagcaaccaggaagggaagaactcaggtaaatt 23032953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 52754703 - 52754647
Alignment:
Q  272 gaaacagtttggaagagcttgtgaaaacagcttatgacatatccataagctactttc 328  Q
    ||||| |||||||||||||| ||||||||| ||||||| | |||||||||| |||||    
T  52754703 gaaactgtttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttc 52754647  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 34254775 - 34254830
Alignment:
Q  273 aaacagtttggaagagcttgtgaaaacagcttatgacatatccataagctactttc 328  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  34254775 aaactgtttggaaaagcttatgaaaacagtttatgacatatccataagctactttc 34254830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 24624308 - 24624267
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataa 319  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  24624308 gtttggaagagcttatgaaaacagcttatgacatgtccataa 24624267  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 25182966 - 25183004
Alignment:
Q  285 agagcttgtgaaaacagcttatgacatatccataagcta 323  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  25182966 agagcttatgaaaacaacttatgacatatccataagcta 25183004  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 27290873 - 27290917
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataagct 322  Q
    |||| ||||||||| |||||||||||||||||||  |||||||||    
T  27290873 gtttcgaagagcttatgaaaacagcttatgacatgcccataagct 27290917  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 29169908 - 29169953
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataagcta 323  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  29169908 gtttgggagagcttatgaaaacagcatatgacatatccataagcta 29169953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 29168644 - 29168687
Alignment:
Q  285 agagcttgtgaaaacagcttatgacatatccataagctactttc 328  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||    
T  29168644 agagcttatgaaaacagcttatgacatgtccataagctattttc 29168687  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 39881693 - 39881726
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacat 311  Q
    ||||||||||||||||||||| ||||||||||||    
T  39881693 gtttggaagagcttgtgaaaatagcttatgacat 39881726  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 9562227 - 9562267
Alignment:
Q  271 cgaaacagtttggaagagcttgtgaaaacagcttatgacat 311  Q
    |||||| |||||||||||||| ||||||||||| |||||||    
T  9562227 cgaaactgtttggaagagcttatgaaaacagctcatgacat 9562267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 11639367 - 11639432
Alignment:
Q  257 ggcataagcacgttcgaaacagtttggaagagcttgtgaaaacagcttatgacatatccataagct 322  Q
    |||||||| || || || ||| ||| ||||||||| ||||||||||||||||||| ||||||||||    
T  11639367 ggcataagaacttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagct 11639432  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 3738167 - 3738117
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataagctactttc 328  Q
    ||||| |||| |||||| |||||||||||||||| |||||||||| |||||    
T  3738167 gtttgaaagatcttgtggaaacagcttatgacatgtccataagctgctttc 3738117  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 2767728 - 2767765
Alignment:
Q  285 agagcttgtgaaaacagcttatgacatatccataagct 322  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  2767728 agagcttgtggaaacagcttatgacatgtccataagct 2767765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 32976076 - 32976032
Alignment:
Q  278 gtttggaagagcttgtgaaaacagcttatgacatatccataagct 322  Q
    |||||||||||||| |  |||||||||||||||| ||||||||||    
T  32976076 gtttggaagagcttatagaaacagcttatgacatttccataagct 32976032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 40421912 - 40421848
Alignment:
Q  18 aagaagggccagacagcgcttcacatggcagtaaagggacaaaatcttgaggtagtggaagagct 82  Q
    |||||||| || ||||| || || |||||||| || ||||||||||| ||||||||||| |||||    
T  40421912 aagaaggggcaaacagcactccatatggcagttaaaggacaaaatctggaggtagtggatgagct 40421848  T

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