View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17633_low_6 (Length: 476)

Name: NF17633_low_6
Description: NF17633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17633_low_6
NF17633_low_6
[»] chr2 (4 HSPs)
chr2 (29-463)||(41470392-41470820)
chr2 (34-457)||(40751535-40751958)
chr2 (29-457)||(41477280-41477708)
chr2 (29-457)||(41484286-41484714)
[»] chr4 (4 HSPs)
chr4 (19-461)||(16407993-16408435)
chr4 (221-352)||(52481059-52481190)
chr4 (29-188)||(52481190-52481349)
chr4 (376-461)||(52472306-52472391)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 29 - 463
Target Start/End: Complemental strand, 41470820 - 41470392
Alignment:
Q  29 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |  |||    
T  41470820 tgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgcttgttgaggatgtatcac 41470721  T
Q  129 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 228  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| |||||||||||| | || |||||||||||||||| |||||||||||||||||||    
T  41470720 gccctccaattcctctttctttttatgcagctccattttgattgcctccaattttttcatctcttctagatcagtctctcgaatgtgactcattacctgg 41470621  T
Q  229 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 328  Q
    ||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470620 agagctcctttcagccgttc------caattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 41470527  T
Q  329 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgatacagtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470526 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgatacattaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgc 41470427  T
Q  429 tcttcggccaaatacatcattttttcatcggccct 463  Q
    |||||||||||||||||||||||||||||||||||    
T  41470426 tcttcggccaaatacatcattttttcatcggccct 41470392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 34 - 457
Target Start/End: Complemental strand, 40751958 - 40751535
Alignment:
Q  34 aagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccacgccct 133  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||  ||    
T  40751958 aagatacatacacttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtgtttgttgaagatcttccacgttct 40751859  T
Q  134 ccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctggagagc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||    
T  40751858 ccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctggatcagtctctccaatgtgattcattacctggaaagc 40751759  T
Q  234 tcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgc 333  Q
    ||||||||||||||| || ||||||||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40751758 tcctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctgc 40751659  T
Q  334 atcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctctt 432  Q
    | ||||||||||||||||| |||||||| ||||| | ||||| | ||||||| |||| ||||| ||||| ||||||| |||||| |||||||||| ||||    
T  40751658 aacatccaaccaaaagagtcctcaaaacctaagtat-atacatgaaactgaattaaaaactgtcgataataggaaaatgaaatgcgtgccttatgttctt 40751560  T
Q  433 cggccaaatacatcattttttcatc 457  Q
    | |||||||||||||||||||||||    
T  40751559 ccgccaaatacatcattttttcatc 40751535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 457
Target Start/End: Complemental strand, 41477708 - 41477280
Alignment:
Q  29 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41477708 tgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 41477609  T
Q  129 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 228  Q
    ||| |||||||||||||| |||||||||||||||||| ||||| | |||| ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  41477608 gccttccaattcctcttctttttcctgcagctccattttgatttcctccagttttttcttctcttctagatcagtctctccaatgtgattcattacctgg 41477509  T
Q  229 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 328  Q
    | ||||||||||||| |||| || ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41477508 aaagctcctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctt 41477409  T
Q  329 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatg 427  Q
    |||||| ||||||||||||||||| ||||||||| |||| | ||| | || |||||| |||| ||||||||||||||||||  |||||   |||||||||    
T  41477408 tctgcaacatccaaccaaaagagtcctcaaaactgaagtat-ataaatgttactgaattaaaaactgtagataaaaggaaagtgaaatacttgccttatg 41477310  T
Q  428 ctcttcggccaaatacatcattttttcatc 457  Q
     ||||| |||||| ||||||||||||||||    
T  41477309 ttcttcagccaaagacatcattttttcatc 41477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 29 - 457
Target Start/End: Complemental strand, 41484714 - 41484286
Alignment:
Q  29 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 128  Q
    |||| ||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  41484714 tgaggaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccac 41484615  T
Q  129 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 228  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  41484614 accctctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctgg 41484515  T
Q  229 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 328  Q
    | ||||||||| ||| |||| || |||||||||||||  ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41484514 aaagctccttttagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctt 41484415  T
Q  329 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatg 427  Q
    |||||| ||||||||||||||||| || ||||||||||| | ||||| | ||||||| |||| ||||||| ||| ||||||| |||| ||||||||||||    
T  41484414 tctgcaacatccaaccaaaagagtccttaaaacttaagtat-atacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatg 41484316  T
Q  428 ctcttcggccaaatacatcattttttcatc 457  Q
     ||||| ||||| |||||||||||||||||    
T  41484315 ttcttctgccaagtacatcattttttcatc 41484286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 16407993 - 16408435
Alignment:
Q  19 acaaactacgtgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaa 118  Q
    ||||||||  ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16407993 acaaactagatgagataggtacatacacttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttgaa 16408092  T
Q  119 gatcttccacgccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgact 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |    
T  16408093 gatcttccacaccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatttcgatcagtctctccaatgtgatt 16408192  T
Q  219 cattacctggagagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttc 318  Q
    ||||||||||| ||||||| | ||| |||||| |||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  16408193 cattacctggaaagctcctcttagccgttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttc 16408292  T
Q  319 tctttttctttctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgt 417  Q
    |||||||||||||||| ||| ||||||||| ||| |||||||||| || | || ||| ||||||||| |||| |||  ||||||||| |||| ||||| |    
T  16408293 tctttttctttctgcaacatacaaccaaaatagtcctcaaaacttgag-tggacacatgtaactgaattaaaaactcgagataaaagaaaaatgaaatct 16408391  T
Q  418 gtgccttatgctcttcggccaaatacatcattttttcatcggcc 461  Q
    |||||||||| ||||| || |||  |||||||||||||||||||    
T  16408392 gtgccttatggtcttcagctaaacgcatcattttttcatcggcc 16408435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 221 - 352
Target Start/End: Complemental strand, 52481190 - 52481059
Alignment:
Q  221 ttacctggagagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctc 320  Q
    |||||| || |||| || ||| ||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  52481190 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 52481091  T
Q  321 tttttctttctgcatcatccaaccaaaagagt 352  Q
     ||||||||||||| |||||||||||||||||    
T  52481090 cttttctttctgcaacatccaaccaaaagagt 52481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 52481349 - 52481190
Alignment:
Q  29 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 128  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||     
T  52481349 tgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttgaagatcatccat 52481250  T
Q  129 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttctt 188  Q
    | | |  |   ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  52481249 gtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 52481190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 52472391 - 52472306
Alignment:
Q  376 gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcattttttcatcggcc 461  Q
    ||||||||| |||||| |||| || |||||||||  ||||| |||||||||| ||||| ||||||| |||||||||||||||||||    
T  52472391 gtaactgaattaaatattgtacatgaaaggaaaatcaaatgcgtgccttatgttcttcagccaaatgcatcattttttcatcggcc 52472306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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