View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_11 (Length: 484)
Name: NF17635_high_11
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 33859830 - 33860242
Alignment:
| Q |
12 |
acagagagtttaaagaaaaatgcaagagcagattcgctaggcaagcatcaatttgtcaagctaatcatggtggtttgatgacttgattggatgagctatc |
111 |
Q |
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| T |
33859830 |
acagagagtttaaagcaaaatgcaagagcagattcgctaagcaagcatcaatttgccaagctaatcatggtggtttgatgacttgattggatgagctatc |
33859929 |
T |
|
| Q |
112 |
attttcctccatctgaagaaagctcagattctctacacgagcataactttgtctatcgacttcccacttataagaattctataaatagatgtcaccactt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33859930 |
attttcctccatctgaagaaagctcagattctctacacgaacataactttgtctatcgaattcccacttataagaattctataaatagatgtcaccactt |
33860029 |
T |
|
| Q |
212 |
cttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaat-ggg |
310 |
Q |
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| T |
33860030 |
cttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaatgggg |
33860129 |
T |
|
| Q |
311 |
aatcatcttcggggtctaatctcttcccttcttgtttcttattataagactatgcataactaatcctctctatcttttggcttaagcatagtttctatga |
410 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
33860130 |
aatcttctttggggtttaatctcttcccttcttgtttcttattataagactatgcataactaatcctctctatcttttggattaagcatagtttctaata |
33860229 |
T |
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| Q |
411 |
ctcttttgtagat |
423 |
Q |
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| T |
33860230 |
ctcttttgtagat |
33860242 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 31263 - 31221
Alignment:
| Q |
100 |
ggatgagctatcattttcctccatctgaagaaagctcagattc |
142 |
Q |
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| T |
31263 |
ggatgagctatcactttcctccatttaaagaaagctcagattc |
31221 |
T |
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