View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_13 (Length: 429)
Name: NF17635_high_13
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 24570225 - 24569893
Alignment:
| Q |
86 |
attgaaaaccttttgaaataattgtacaactaatctattcatgatgcgatgaattgaatatctctatgtgggctattatatgataattgttaaatgcgtt |
185 |
Q |
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| T |
24570225 |
attgaaaaccttttgaaataattgtacaactaatctatgcatgatgcgatgaattgaatatctctatgtgggctattatatgataattgttaaatgcgtt |
24570126 |
T |
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| Q |
186 |
tatgtgatatgtgtgacgaatcttctcgaatcttttataatttattttaggattttatagatgacttagagtgagttattcatgattttggagagaattc |
285 |
Q |
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| T |
24570125 |
tatgtgatatgtgtgacgactcttctcgaatcttttataatttattttaggattttatagatgacttagagtgagttattcatgattttggagagaattc |
24570026 |
T |
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| Q |
286 |
gtaacatttttaattaattgaaacatta--tcttttaattctataatcagtcagcaagcgatagcgttgatgttttcactggggtcgttcttatgcatga |
383 |
Q |
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| T |
24570025 |
gtaacatttttaattaattgaaacattatgtcttttaattctatagtcagtcagcaagcgatagtgttgatgttttcactggggtcgttcttatgtatga |
24569926 |
T |
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| Q |
384 |
caattgtgcatgtggtcaaaaggtgcatttctt |
416 |
Q |
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| T |
24569925 |
caattgtgcatgtggtcaaaaggtgcatttctt |
24569893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 24571008 - 24570931
Alignment:
| Q |
14 |
aggaataagtgtcaagtgtgagaaaatatcatgtgtcttcttcattcaaaattgtacgagctgataattttcattgaaaac |
94 |
Q |
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| T |
24571008 |
aggaataagtgtcaaatgtgagaaaatatcatgtgt---cttcattcaaaatttctcgagctgataattttcattgaaaac |
24570931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 3710666 - 3710608
Alignment:
| Q |
218 |
ttttataatttattttaggattt-tatagatgacttagagtgagttattcatgattttg |
275 |
Q |
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| T |
3710666 |
ttttatcatttattttaggatttgtttagaggaattagagtgagttactcatgattttg |
3710608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 15345438 - 15345380
Alignment:
| Q |
216 |
tcttttataatttattttaggattttatagatgacttagagtgagttattcatgatttt |
274 |
Q |
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| T |
15345438 |
tcttttataatttattttaggtttttctatatgatttagagtgggttatccatggtttt |
15345380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 14078902 - 14078954
Alignment:
| Q |
211 |
tcgaatcttttataatttattttaggattttatagatgacttagagtgagtta |
263 |
Q |
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|||| |||||||| |||||||||||||||| |||| || ||||||||||||| |
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| T |
14078902 |
tcgagtcttttatcgtttattttaggattttctagaagatttagagtgagtta |
14078954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 8834109 - 8834170
Alignment:
| Q |
215 |
atcttttataatttattttaggattttatagatgacttagagtgagttattcatgattttgg |
276 |
Q |
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||||||||| ||||| ||| |||||||| ||||| |||||| |||||| |||||||||||| |
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| T |
8834109 |
atcttttatgatttaacttatgattttatggatgatttagagcgagttactcatgattttgg |
8834170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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