View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17635_high_2 (Length: 675)

Name: NF17635_high_2
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17635_high_2
NF17635_high_2
[»] chr1 (1 HSPs)
chr1 (18-666)||(44973544-44974189)


Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 44973544 - 44974189
Alignment:
Q  18 ttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaatacagtataattccat 117  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  44973544 ttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactatata----agtgctgattgcttgtaatacagtataattccat 44973639  T
Q  118 gataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973640 gataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatcatccacaccaacgt 44973739  T
Q  218 tatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaac 316  Q
    |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973740 tatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagctatggaaaaccaac 44973839  T
Q  317 catcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcattgcaccatttctctt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44973840 catcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcattgcaccatttctctt 44973939  T
Q  417 cttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattgttggtccaagtggt 516  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973940 cttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattgttggtccaagtggt 44974039  T
Q  517 gcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttcccttaactcttcacctatcactaacccttccacat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  44974040 gcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttctcttaactcttcacctatcactaacccttctacat 44974139  T
Q  617 tcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974140 tcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg 44974189  T

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